Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g2357 ATGGGAGAAGCTCACGATACGTATACCAACGGTGTGATGCCCGCTAGATTGAACAAAGTTGTTTTAGCTTATAGCGGTGGTTTGGACACGTCTGTTATCGTACCATGGTTGAGGGAGAAATATGGGTGTGAGGTGGTTTGCTTCACTGCTGATGTTGGGCAAGGAGTGATGGAATTGGATGGTTTGGAGGCAAAAGCGAAAGCAAGTGGAGCCTGTCAACTTGTTGTGAAAGACCTGAGGGATGAATTTGTCGAAGAATACGTGTTCCCTTGCTTGCGAGCTGGTGCCATTTATGAGAGGAAATACTTGCTTGGAACTTCCATGGCCCGCCCTGTCATCGCCAAGGCAATGGTGGATGTCGCCAAAGAAGTTGGAGCTGATGCTGTTGCACATGGTTGCACAGGGAAAGGCAATGATCAGGTACGGTTTGAACTCACATTCTTTGCTCTGAACCCCAAACTACGCGTTATAGCTCCCTGGAGAGAATGGGACATCACTGGAAGAGAAGATGCCATTGAATATGCGAAGAAGCATAACGTGCCCGTCCCTGTCACAAAGAAATCGATATACAGTCGGGACCGGAATATTTGGCATCTAAGTCATGAGGGTGACGTTTTGGAAGATCCAGCTAATGAGCCAAAGAAGGACATGTACATGCTGTCCGTTGATCCCGAGGATGCGCCTAACCAACCCGAATATGTTGAGATTGATTTTGTCTCAGGACTCCCTGTTGCTGTCAATGGGAAAAAGCTGTCACCAGCTTCCCTTCTCGACAAGCTCAATGAAATCGGCGGGAAACACGGCATCGGCCGAGTTGACATGGTTGAAAACCGCCTCGTCGGGATGAAGAGCCGCGGCGTGTACGAAACACCAGGAGGAACCATCCTATTCACAGCTGCACGCGAGCTCGAGTCCTTAACACTTGATCGTGAGACAATTCAAGTCAAGGACTCACTCGCTCTCAAATACGCCGAGCTGGTGTATGCAGGGCGATGGTTCGACCCACTCCGCGAAGCCATGGACGGTTTCATGGAGAAGATAACCGCGACAACCACCGGAACGGTCACACTCAAACTGTACAAAGGCTCAGTGACAGTGACCGGGCGCAAAAGTCCCAACAGCCTGTACAGGCAAGACATATCCTCATTTGAAAACGGGGATGTCTACAACCAAGCTGATGCTGCTGGATTCATCCATCTCTACGGCCTCCCAACCAGAGTCCGAGCAATGCTTGAACAAGGAATCTAA 1248 49.92 MGEAHDTYTNGVMPARLNKVVLAYSGGLDTSVIVPWLREKYGCEVVCFTADVGQGVMELDGLEAKAKASGACQLVVKDLRDEFVEEYVFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAKEVGADAVAHGCTGKGNDQVRFELTFFALNPKLRVIAPWREWDITGREDAIEYAKKHNVPVPVTKKSIYSRDRNIWHLSHEGDVLEDPANEPKKDMYMLSVDPEDAPNQPEYVEIDFVSGLPVAVNGKKLSPASLLDKLNEIGGKHGIGRVDMVENRLVGMKSRGVYETPGGTILFTAARELESLTLDRETIQVKDSLALKYAELVYAGRWFDPLREAMDGFMEKITATTTGTVTLKLYKGSVTVTGRKSPNSLYRQDISSFENGDVYNQADAAGFIHLYGLPTRVRAMLEQGI 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 73322250 73325574 - Tan0009339.1 Tan09g2357 764700

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g2357 415 NCBIfam argininosuccinate synthase 19 408 IPR001518 GO:0004055(InterPro)|GO:0005524(InterPro)|GO:0006526(InterPro)
Tan09g2357 415 CDD Argininosuccinate_Synthase 20 404 IPR023434 GO:0004055(InterPro)
Tan09g2357 415 Pfam Arginosuccinate synthase C-terminal domain 190 407 IPR048268 -
Tan09g2357 415 ProSitePatterns Argininosuccinate synthase signature 2. 132 143 IPR018223 GO:0004055(InterPro)|GO:0005524(InterPro)|GO:0006526(InterPro)
Tan09g2357 415 Gene3D HUPs 19 189 IPR014729 -
Tan09g2357 415 FunFam Argininosuccinate synthase 191 414 - -
Tan09g2357 415 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 18 182 - -
Tan09g2357 415 PANTHER ARGININOSUCCINATE SYNTHASE 16 412 IPR001518 GO:0000050(PANTHER)|GO:0000053(PANTHER)|GO:0004055(InterPro)|GO:0004055(PANTHER)|GO:0005524(InterPro)|GO:0005737(PANTHER)|GO:0006526(InterPro)|GO:0006526(PANTHER)
Tan09g2357 415 SUPERFAMILY Argininosuccinate synthetase, C-terminal domain 187 413 IPR024074 GO:0004055(InterPro)
Tan09g2357 415 Pfam Arginosuccinate synthase N-terminal HUP domain 19 181 IPR048267 -
Tan09g2357 415 Gene3D Single helix bin 379 414 - -
Tan09g2357 415 Gene3D Argininosuccinate synthetase, chain A, domain 2 80 370 IPR024074 GO:0004055(InterPro)
Tan09g2357 415 ProSitePatterns Argininosuccinate synthase signature 1. 23 31 IPR018223 GO:0004055(InterPro)|GO:0005524(InterPro)|GO:0006526(InterPro)
Tan09g2357 415 FunFam Argininosuccinate synthase 15 190 - -
Tan09g2357 415 Hamap Argininosuccinate synthase [argG]. 17 413 IPR023434 GO:0004055(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g2357 K01940 - - csv:101215982 804.283
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g2943 Tan-Chr5:81610564 Tan09g2357 Tan-Chr9:73322250 1.20E-208 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g140 . . . . . . . Bma12g01077 Cmo13g00830 Cmo18g00206 . Cma11g00044 Car10g00059 Car11g00039 Sed08g2445 Cpe20g00313 Cpe04g01606 Bhi02g00535 Tan09g2357 Cmetu12g1017 . Hepe09g0059 . . Cla06g01732 Cam06g1923 Cec06g1973 Cco06g1977 Clacu06g1879 Cmu06g1821 Cre06g2636 Cone2ag0966 Cone16ag0026 . . Lsi02g00491 Csa01g00954 Chy12g01178 Cme12g01598 . Blo15g00214 . . . . . . . Cmo10g00068 Cmo11g00044 Cma13g00797 . Car13g00646 Car18g00222 Cpe09g00969 . . . . . . . . . . . . . . . Lsi06g01632 Csa01g00067 Chy02g02653 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001306 1 3 2 2 1 3 4 2 2 3 2 2 4 2 3 5 3 2 4 3 3 2 2 2 2 3 2 3 2 2 76