Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g2376 ATGGAGAGCAACAATCAAGCCCAATCCTCCCCTTACCCTCCTCCTCAAGCCCCCGTCCCGGCCCCTCCCTTCCACCACCTCCTCCAGCAGCAGCAGCAGCAGCTTCAGATGTTCTGGTCCTTTCAGCGCCAAGAAATCGAACAGGTTAACGATTTTAAAAACCACCAGCTTCCTTTGGCTCGCATTAAGAAGATCATGAAAGCTGACGAGGACGTGCGTATGATCTCCGCCGAAGCACCCATTTTGTTCGCCAAAGCGTGCGAGCTCTTCATTCTTGAACTCACTATTAGGTCATGGCTCCACGCGGAAGAGAATAAAAGGCGGACATTGCAGAAGAACGATATTGCAGCGGCCATCACGAGGACCGATATCTTTGATTTCTTAGTTGATATTGTGCCTAGGGATGAGATCAAGGACGAGGCTGGGTTGGGAGGCATGGTCGGAGCCACTGCTAGTGGAGTGCCGTACTACTATCCGCCTATGGGCCAACCGGCAGGGGCTCCCGGGGGGATGATGATTGGGAGACCGGCAATGGATCCCACCGGAGTTTACGCCCAGCCGCCGTCGCAGGCGTGGCAATCTGTGTGGCAGACCGCCGCGGAGGATGGTTCTTATGCCAGTGGAGGGAGCAGCGGGCAGGGCAATCTTGATGGTCAGAGCTAA 663 55.51 MESNNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDPTGVYAQPPSQAWQSVWQTAAEDGSYASGGSSGQGNLDGQS 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 73487839 73493351 - Tan0016320.1 Tan09g2376 764719

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g2376 220 SUPERFAMILY Histone-fold 30 128 IPR009072 GO:0046982(InterPro)
Tan09g2376 220 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 32 140 IPR050568 GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
Tan09g2376 220 MobiDBLite consensus disorder prediction 1 23 - -
Tan09g2376 220 Gene3D Histone, subunit A 24 134 IPR009072 GO:0046982(InterPro)
Tan09g2376 220 Pfam Core histone H2A/H2B/H3/H4 48 119 IPR007125 GO:0003677(InterPro)
Tan09g2376 220 FunFam Nuclear transcription factor Y subunit gamma 25 134 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g2376 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g0222 Tan-Chr9:13756473 Tan09g2376 Tan-Chr9:73487839 5.10E-54 dispersed
Tan09g0223 Tan-Chr9:13756473 Tan09g2376 Tan-Chr9:73487839 5.10E-54 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan09g2376 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.5 1.3e-88 323.6
Tan09g0222 . 82 250 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.9 7.8e-54 208.0
Tan09g0223 . 82 250 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.9 7.8e-54 208.0
Tan02g1294 . 82 240 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.4 3.0e-53 206.1
Tan02g1295 . 82 240 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.4 3.0e-53 206.1
Tan09g0222 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.6 3.1e-55 212.6
Tan09g0223 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.6 3.1e-55 212.6
Tan02g1294 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 69.3 2.8e-48 189.5
Tan02g1295 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 69.3 2.8e-48 189.5
Tan09g2376 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 1.0e-42 171.0
Tan09g0222 . 1 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 58.4 4.2e-62 235.3
Tan09g0223 . 1 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 58.4 4.2e-62 235.3
Tan02g1294 . 82 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 71.5 1.2e-51 200.7
Tan02g1295 . 82 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 71.5 1.2e-51 200.7
Tan09g2376 . 34 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 2.6e-51 199.5
Tan09g2376 . 34 192 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.7 5.2e-38 155.2
Tan09g2376 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.4 1.0e-80 297.4
Tan09g0222 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 64.3 8.6e-51 198.0
Tan09g0223 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 64.3 8.6e-51 198.0
Tan02g1294 . 82 240 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.6 4.3e-50 195.7
Tan02g1295 . 82 240 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.6 4.3e-50 195.7
Tan02g1294 . 57 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 85.4 9.3e-64 240.7
Tan02g1295 . 57 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 85.4 9.3e-64 240.7
Tan09g0222 . 54 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 67.8 2.6e-50 196.1
Tan09g0223 . 54 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 67.8 2.6e-50 196.1
Tan09g2376 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 5.8e-50 194.9
Tan02g2212 . 3 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 63.5 4.4e-38 154.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005355 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28446 PF00808 CBFD_NFYB_HMF 2.20E-17 CL0012 Tan TF