Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g2383 ATGGCGGACGTGATGCTGATGAAAGAGATTGAGGACACGGCTGGTCGGCTTGGGATAGACCTTTCCGAAGTCGATTTTGAGTCCATTCGTCTCCCTCCTGGCGAGGATTTCGGAATCATTAGTGATGATGAAGAGGTTCTACAAGAGGAGAGTCTAGAGTTTGATTCTGGGTTCGGAAACATTATAGTTGTTGACAATCTTCCCGTTGTTCCTCCGGAGAAGTTTGAGAAGCTCGAAGGTGTTGTTCGTAAAATTTTTGGACAGATAGGAGTTATCAAGGATGATGGTCTATGGATGCCTGTTGACCCTACTACACAGAAAACTTTAGGGTACTGCTTTATTGAGTATGGCACTCCACAGGAGGCTGAGCTTGCCAAAGAGAAGACTGATGGGTACAAGCTGGATAGAGCACATATTTTCACTGTTAACATGTTTGAGGACTTCAACAGATTTATGAAAGTCCCAGATGAGTGGGCCCCTCCTGAAATTAACCCATATACTCCTGGGGAAAATCTTCAACAGTGGCTTACTGATGAAAAAGCACGGGATCAGTTTGTTATTCGTTCTGGTTCTGACACCGAGGTCTTCTGGAATGATGCTAGACATTTGAAGCCTGAGCCTGTCTATAAGCGTCCATTCTGGACTGAAAGTTTTGTGCAGTGGTCCCCCTTGGGGACTTACCTAGCGACAATTCACCGACAGGGTGCTGCAGTTTGGGGTGGAGCAGGTACCTTTAACCGTCTGATGCGCTTTGCCCATCAACAGGTTAAGTTAATTGATTTTTCTCCTGGTGAGAAATATCTGGTAACTTACAGCAGCCTTGAACCCAGCAATCCTCGTGATGCAAATAGGATTGTGATCAATATTTTTGATGTGAGAACTGGAAAAGTTATGAGAGATTTCAAGGGAAGCCCTGATGATTTTGCTATTGGAGGAGGAACTGTTGGTGTTGCCGGCGTAAATTGGCCTGTTTTTAGGTGGGGTGGTGGGAAAGATGATAAATATTTTGCCAGGATTGGGAAGAATGTGATTTCAGTCTATGAAACAGAGACTTTCTCCCTTATTGACAAAAAATCTTTGAAGGTTGAAAATGTTATGGATTTCTGCTGGTCCCCCACAGATCCCATTATTGCACTCTTTGTTCCTGAGCTAGGTGGTGGGAACCAACCGGCTAGGGTGAGTCTTGTGCAAGTCCCCAGCAAGGAGGAGTTGAGACAGAAAAATCTTTTCAGTGTTAGTGATTGCAAAATGTACTGGCAAAGTAATGGGGATTATCTTGCTGTCAAGGTTGATAGATATACGAAGACAAAGAAAAGCACATACACAGGGTTTGAGCTTTTCCGCATAAAAGAGCGGGATATTCCTATTGAAGTGTTGGAGCTTGAGAATAAGAACGACAAGATCATTGCATTTGCATGGGAGCCAAAGGGGCATAGGTTTGCAGTTATTCATGGTGACAACCCAAGGCCAGATGTTAGCTTTTACTCTATGCGAAGCACTCACAACAGTGGCCGAGTATCAAAACTTACAACTCTCAAAGGCAAGCAGGCCAATGCTCTTTTCTGGTCACCTGCTGGACGCTTCATTATTCTTGCTGGTCTGAAAGGTTTCAACGGACAGTTGGAATTCTACAATGTTGATGAGCTGGAGACGATGGCAACTACCGAGCATTTTATGGCCACTGATATTGAATGGGATCCTACTGGAAGGTATGTTGCAACTGCTGTAACTTCAGTTCACGAGATGGAAAATGGTTTCAACATATGGTCCTTCAATGGAAAGCTCCTCTATCGAATCTTGAAGGATCATTTCTTTCAGTTTGCATGGCGGCCGAGGCCACCATCCTTCTTGAGTCCGGAGAAAGAGGAAGAGATAGCGAAGAATTTGAAGAAGTACAGTAAGAAGTACGAGGCGGAAGATCAGGATGTATCCATGCTACTGAGCGAACAGGATCGCGAGAAACGGAGAATGTTGAAGGACGAGTGGGAGAAGTGGGTGAATGAATGGAAGAGATTGCACGAAGAAGAGAAGCTGTTACGGCAGAAACTGCGGGATGGCGAAGCCAGTGACGAGGAAGAGGAATACGAAGCCAAAGAGGTCGAAGTAGAAGAGATTTTGGATGTGTCGGAGGAAATTTTGTCCTTTGATTTTGGGCAGGAGTGA 2163 44.85 MADVMLMKEIEDTAGRLGIDLSEVDFESIRLPPGEDFGIISDDEEVLQEESLEFDSGFGNIIVVDNLPVVPPEKFEKLEGVVRKIFGQIGVIKDDGLWMPVDPTTQKTLGYCFIEYGTPQEAELAKEKTDGYKLDRAHIFTVNMFEDFNRFMKVPDEWAPPEINPYTPGENLQQWLTDEKARDQFVIRSGSDTEVFWNDARHLKPEPVYKRPFWTESFVQWSPLGTYLATIHRQGAAVWGGAGTFNRLMRFAHQQVKLIDFSPGEKYLVTYSSLEPSNPRDANRIVINIFDVRTGKVMRDFKGSPDDFAIGGGTVGVAGVNWPVFRWGGGKDDKYFARIGKNVISVYETETFSLIDKKSLKVENVMDFCWSPTDPIIALFVPELGGGNQPARVSLVQVPSKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDVSFYSMRSTHNSGRVSKLTTLKGKQANALFWSPAGRFIILAGLKGFNGQLEFYNVDELETMATTEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRILKDHFFQFAWRPRPPSFLSPEKEEEIAKNLKKYSKKYEAEDQDVSMLLSEQDREKRRMLKDEWEKWVNEWKRLHEEEKLLRQKLRDGEASDEEEEYEAKEVEVEEILDVSEEILSFDFGQE 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 73525402 73530985 + Tan0020663.1 Tan09g2383 764726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g2383 720 SUPERFAMILY RNA-binding domain, RBD 58 142 IPR035979 GO:0003676(InterPro)
Tan09g2383 720 FunFam Eukaryotic translation initiation factor 3 subunit B 55 154 - -
Tan09g2383 720 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723(InterPro)
Tan09g2383 720 Pfam Eukaryotic translation initiation factor eIF2A 407 607 IPR013979 -
Tan09g2383 720 FunFam Eukaryotic translation initiation factor 3 subunit B 412 627 - -
Tan09g2383 720 FunFam Eukaryotic translation initiation factor 3 subunit B 181 383 - -
Tan09g2383 720 CDD RRM_eIF3B 59 143 IPR034363 -
Tan09g2383 720 SMART rrm1_1 61 143 IPR000504 GO:0003723(InterPro)
Tan09g2383 720 Gene3D - 55 154 IPR012677 -
Tan09g2383 720 PIRSF Transl_init_eIF3b 8 714 IPR011400 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Tan09g2383 720 Pfam RNA recognition motif 82 136 IPR000504 GO:0003723(InterPro)
Tan09g2383 720 Gene3D - 175 383 IPR015943 GO:0005515(InterPro)
Tan09g2383 720 Coils Coil 688 708 - -
Tan09g2383 720 Gene3D - 419 624 IPR015943 GO:0005515(InterPro)
Tan09g2383 720 SUPERFAMILY DPP6 N-terminal domain-like 217 601 - -
Tan09g2383 720 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 714 IPR011400 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Tan09g2383 720 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 29 709 IPR011400 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0005852(PANTHER)|GO:0005852(InterPro)|GO:0006413(PANTHER)|GO:0006413(InterPro)|GO:0031369(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3026 Tan-Chr1:75357720 Tan09g2383 Tan-Chr9:73525402 0.00E+00 dispersed
Tan01g3027 Tan-Chr1:75357720 Tan09g2383 Tan-Chr9:73525402 0.00E+00 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g2383 K03253 - csv:101213144 1409.43