Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g2394 ATGCACAGAAGGCGCCTGCGACTGAGTTGGTCTTCCGACGAAGAACACGCAAACGAAGACAACGAACATGATCCTCAACGCCATGATTCCTCCCGTACTTCTCTTCAGCCTGTCATTCTCGACAATCTCAACTCTCATTTTAATCCCAATGTTTCTGAGCCCGTCCAAATTTCCGACGACGACGAGCAAGATTTTATCGACGTCTCCGATCATCTCTCGCCTCCCTCTCCGGATTCTGATCATTCTCTCCGCCACTCGCCTCAGCTGAATCCGCTTAATTCTGGCGTGGCTTCCAGCCAGCCGTCGTGTCCTGTAAGTGAGTTCCTTCGGGGGCTTGGTTTGAGCTTGACGAGAGAGTGGTTGGATGCCTGTATCCGTGCCCTAGAAGGTTCTATACCTGGTTTCTTGAGCCTCAACCCAACGGAGAAGGGAAAGCTATGTTTTGAGCAGTTTTTAGTTTCTGATATGAATTTCTCGGGTGCTGGCGTCCTACCTGAAAATGTCGATTCTATGCATCTCGTTGATCTCCCTGGGCCGTACGTACTGCAGGTCGATGAAATAGTTAACATCAGTTGTCCTTTAAAAGGTAGATATCAGACTGCCCCTGCGAGTATTAAGAGGTGCCTTAAGCTGTCCATGACGGATGGTGTTCAACGAGTTTTTGGCATGGAATACAGGCCTATTAAGGATCTCGAAGTTTTAGCACCTGCTGGATTGAAGGTAGTTATCTTTAATGCAAGTGTTCGTCATGGGCTTCTAATGCTAGTTCCTGAAGCTTTTGAGGTTCTAGGAGGTCTGGTCGAGGAACTGGAGGCAGCTCGGCAGCGGCTGGTTGTCGAAGTGAACAAGCCACCGAGAGGAAGGAGAACGAGGACAGGTGTGGTTCCTCCTTTGGCAAGTAGAGCAACACATGCTGCATGGCCATCAGACACCGTACAAGAGCCCGGCCATCCCAGCGGAATAGTGGGTACTGAACCATCTCGTTCAGACCAAGGTGTTGGCATGTTCCATAGGGGAAATGAAGCATTTGCTGCTCCAGTTGGTGAAGCAGTTGCTGCTCCATTTGTTGAAGCATTTGCTACTCCAGTCAGCAGAACAAATGCTAATTCTGAGCTATCTTCTAATTTTGTTTCAAATGTTGAGGAGATTCATTCACATTCTGATCACAGTAGTAGGGCCAGTGCCGAGCCTACTGTTGTGTCCAATTCAGTAGAGGATACCATTATGGTCAATTCGGTAGAGGATATCAATATGGTCGATATTGAGCATCCACTCATTCTATCTGGTGATAGAGAAATTCCTTTCACTTACTTGGCTAGTTTGTCAGCTAAGTGGGCAGCAGTGAAGGAAAAATCTCCTTCAGTTCGTGGAAAAATCAAGGCAAAGGACAACATACGAGCTACATGTTTATGTTGA 1416 47.53 MHRRRLRLSWSSDEEHANEDNEHDPQRHDSSRTSLQPVILDNLNSHFNPNVSEPVQISDDDEQDFIDVSDHLSPPSPDSDHSLRHSPQLNPLNSGVASSQPSCPVSEFLRGLGLSLTREWLDACIRALEGSIPGFLSLNPTEKGKLCFEQFLVSDMNFSGAGVLPENVDSMHLVDLPGPYVLQVDEIVNISCPLKGRYQTAPASIKRCLKLSMTDGVQRVFGMEYRPIKDLEVLAPAGLKVVIFNASVRHGLLMLVPEAFEVLGGLVEELEAARQRLVVEVNKPPRGRRTRTGVVPPLASRATHAAWPSDTVQEPGHPSGIVGTEPSRSDQGVGMFHRGNEAFAAPVGEAVAAPFVEAFATPVSRTNANSELSSNFVSNVEEIHSHSDHSSRASAEPTVVSNSVEDTIMVNSVEDINMVDIEHPLILSGDREIPFTYLASLSAKWAAVKEKSPSVRGKIKAKDNIRATCLC 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 73581238 73585400 - Tan0009705.2 Tan09g2394 764737

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g2394 471 SMART DUF1767_2 106 199 - -
Tan09g2394 471 MobiDBLite consensus disorder prediction 66 100 - -
Tan09g2394 471 MobiDBLite consensus disorder prediction 1 36 - -
Tan09g2394 471 MobiDBLite consensus disorder prediction 75 100 - -
Tan09g2394 471 MobiDBLite consensus disorder prediction 303 324 - -
Tan09g2394 471 Pfam RMI1, N-terminal OB-fold domain 164 275 IPR013894 -
Tan09g2394 471 FunFam RecQ-mediated instability protein (DUF1767) 155 281 - -
Tan09g2394 471 Gene3D - 155 280 IPR042470 -
Tan09g2394 471 PANTHER RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1 RMI1 367 461 - GO:0000712(PANTHER)|GO:0000724(PANTHER)|GO:0016604(PANTHER)|GO:0031422(PANTHER)
Tan09g2394 471 MobiDBLite consensus disorder prediction 7 30 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g2394 K10990 - - csv:101222548 675.241
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g2393 Tan-Chr9:73581238 Tan09g2394 Tan-Chr9:73581238 1.20E-244 tandem
Tan09g2394 Tan-Chr9:73581238 Tan09g2395 Tan-Chr9:73581238 1.60E-244 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g74 . . Bda06g00720 . . . . Bma12g01086 . . Cma10g00048 . Car10g00037 . Sed03g2779 . . Bhi02g00662 Tan09g2394 Cmetu02g0524 . . . . Cla06g01757 Cam06g1949 Cec06g1998 Cco06g2004 Clacu06g1906 Cmu06g1846 Cre06g2660 . . Cone13ag0234 Cone19ag0220 . . . . . Blo15g00201 . . Bpe07g00896 . . . . Cmo10g00043 . . . . . . . . . . . . . . . . . . . . . . Csa01g00040 Chy02g02679 Cme02g02082
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010501 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 0 1 1 3 1 31