Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g2396 ATGGACACCTCACAGCGGGAACCGAGTTATAGACGAGTTCCAGATGAACCAGAGCTCGATCTCTACACCATACCAAGTCACTCCAGTTGGTTTTTGTGGGATGAGATTCACGAAACGGAGCAATCAGCATTTAAGGAGTTTTTCGATGGAAGCTCAATATCAAGAACACCGCGAATATATAAAGAATATAGAGATTTCATTATCAATAAATACAGGGAAGAGCCTTCGAGCAGGCTTACATTCACCGAGGTTCGCAAGTCTTTGGTGGGGGATGTTAATTTGCTTCATAAGGTGTTTATTTTCTTGGAGACATGGGGGCTGATCAACTTCGGCTCAACTTCGGATGGCAATGATTTGGCGGAGGTGGAAGATGGAGAGAGTCCTACAATTAAGATTGAAGAGGGGGTCCCCAATGGGATTCGTGTAGGAGCAACGCCAAATTCGGTCAAACCAATCTCAGCACCACCTGTTGTGGAAGACAGTTCTATCGTTAACGGGAATGGGTTTAAATTGCCCCCTTTGACTTCATATTCAGATGTCTTCACTGACTTGTTGAAACAGAAGATTTTAGTCTGTGGGAATTGTGGCCAGCATTGTGGATCTAAATACCATCAATGCGCCAAGGATGGTTATTTAATTTGCATAAATTGTTTCAACAATGGAAATTACGGGGAGCAGAGGCTTTTGGAAGATTTCGAGTTGAAGACCAACGAGTTCATTGAAGATAGTGGTAATGCCGGAGCTGTGTGGACTGAAGCAGAAACTCTGCTTCTTCTGGAATCCGTTTTGAAGCATGGAGATGATTGGGATCTCGTTGCTCAAAACATTCAAACAAAGACGAAATTGGATTGTATATTGAAGCTCGTCGAGTTGCCTTTTGGGGACTTCTTGTTATGTTCTGAAGCTCAAAGGAATGATGTTAGTTGTCCCAATAACAACGTTACTAGTGAAAAGGAAATTAGACTCCCTTCACCTAACAGTCAGGAGATTGCCGGAAGTGAAGACCAATGTACCAAGGACATAAATGAGGATGAAGATGAAGAGAACCAAGGTCCTTCCAAGCGACAGTGCATTGCTTCTGTTCCAGATACGAGTAGTTCTCTGATGAAACAGGTAGCTTTGATATCAAGCATGGTTGGACCACATATTATGGCGGCAGCTGCCACTGCTTCTGTTACAGCACTCTGTGACGAAAATTTATATCCAAAAGAAATCCTTGACGATCAAGATTTTTTTGTACCTAAAGAATTGTGTTCTGCGGCTTCCCCCACATCAAATCACGAGGTTGAGAGAATTCTCAATAACGAAGATTCAGTAGCAAAGGAAAGGCCTCAATCAGGTGATATAATGGCCGAGGACAAAGATGGCATACCTTTAATCTTACGAATTAGAGCAGCAATTGCAACAGCACTTGGCGCTGCTGCAGCACATGCAAAATTACTGGCTGATCAGGAAGAGAGAGAAATGGAATATTTATTGGCGATAATGATAGAAACACAGATGAAGAAGTTGCAATGCAAAATTAAGCATCTTGAAGATCTCGAGTTAATTATGGAAGCAGAATACCCTGTGATTGAGGAGCTAGAAGATAAACTGTTGATGGAGCGGGTTAGTGTTTTGCAATCTGCATTTGATCTTGGTGTATCTAGGTGGAAGGATTATCCTTCTGTGAAATCGTGA 1680 42.32 MDTSQREPSYRRVPDEPELDLYTIPSHSSWFLWDEIHETEQSAFKEFFDGSSISRTPRIYKEYRDFIINKYREEPSSRLTFTEVRKSLVGDVNLLHKVFIFLETWGLINFGSTSDGNDLAEVEDGESPTIKIEEGVPNGIRVGATPNSVKPISAPPVVEDSSIVNGNGFKLPPLTSYSDVFTDLLKQKILVCGNCGQHCGSKYHQCAKDGYLICINCFNNGNYGEQRLLEDFELKTNEFIEDSGNAGAVWTEAETLLLLESVLKHGDDWDLVAQNIQTKTKLDCILKLVELPFGDFLLCSEAQRNDVSCPNNNVTSEKEIRLPSPNSQEIAGSEDQCTKDINEDEDEENQGPSKRQCIASVPDTSSSLMKQVALISSMVGPHIMAAAATASVTALCDENLYPKEILDDQDFFVPKELCSAASPTSNHEVERILNNEDSVAKERPQSGDIMAEDKDGIPLILRIRAAIATALGAAAAHAKLLADQEEREMEYLLAIMIETQMKKLQCKIKHLEDLELIMEAEYPVIEELEDKLLMERVSVLQSAFDLGVSRWKDYPSVKS 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 73586277 73589227 - Tan0016081.1 Tan09g2396 764739

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g2396 559 ProSiteProfiles SANT domain profile. 245 296 IPR017884 -
Tan09g2396 559 SUPERFAMILY Homeodomain-like 20 114 IPR009057 -
Tan09g2396 559 MobiDBLite consensus disorder prediction 310 335 - -
Tan09g2396 559 CDD SANT 250 287 IPR001005 -
Tan09g2396 559 SMART sant 246 294 IPR001005 -
Tan09g2396 559 Gene3D - 28 114 IPR036388 -
Tan09g2396 559 ProSiteProfiles SWIRM domain profile. 22 119 IPR007526 GO:0005515(InterPro)
Tan09g2396 559 FunFam SWI/SNF complex subunit SMARCC2 isoform c 28 115 - -
Tan09g2396 559 Pfam SWIRM-associated region 1 469 542 IPR032451 -
Tan09g2396 559 Coils Coil 494 521 - -
Tan09g2396 559 Pfam SWIRM domain 33 110 IPR007526 GO:0005515(InterPro)
Tan09g2396 559 Pfam Myb-like DNA-binding domain 250 288 IPR001005 -
Tan09g2396 559 PANTHER SWI/SNF COMPLEX-RELATED 42 543 - -
Tan09g2396 559 ProSiteProfiles Myb-like domain profile. 250 284 IPR001005 -
Tan09g2396 559 MobiDBLite consensus disorder prediction 310 336 - -
Tan09g2396 559 Gene3D - 246 295 - -
Tan09g2396 559 SUPERFAMILY Homeodomain-like 247 295 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g2396 K11649 - - csv:101222310 930.243
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g5172 Tan-Chr1:116770478 Tan09g2396 Tan-Chr9:73586277 1.50E-41 dispersed
Tan01g5173 Tan-Chr1:116770478 Tan09g2396 Tan-Chr9:73586277 1.30E-40 dispersed
Tan09g2396 Tan-Chr9:73586277 Tan09g2397 Tan-Chr9:73586277 1.10E-263 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g72 . . . Bda15g00681 Bpe12g00472 . . . . . Cma10g00047 . Car10g00036 . Sed01g2393 . . Bhi02g00661 Tan09g2396 Cmetu07g1239 . . . . Cla06g01758 Cam06g1950 Cec06g1999 Cco06g2005 Clacu06g1907 Cmu06g1847 Cre06g2661 . . . Cone19ag0221 . . . . . . . . . . . Bma08g00266 . Cmo10g00042 . . . . . . Cpe18g00918 . . . . . . . . . . . . . . Lsi06g01656 Csa01g00039 Chy02g02680 Cme02g02083
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009523 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 33