Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g2398 ATGGCTTCTGAAAACCTAGAAGATAAGAAAGCAGAGGATGAAGCTCCCGTCCACGTCACAAACCAAGACACCAAGGTTGAAGAACATGCTCCCCAACCCCCCAACCCCCAAATTGAACACACTGACGTACCTGATAAAGAACAAGCTACTACTGCCGTGGGCGGTCCCGAAGAGGTAAATGGTGATGTTAAAGCTCAGGAGAGTAACAAGCAGAAAGGCGACCTCGAAATTCAAGAAGCAGCTGAGGAACAGGGCACTACTGCAAATGACGAACCTGAAGAAAAAACTGTCGACAAGAAAGGCGAAGACAGCGCGGAGGAGGAACACGAAGGACACAACGAGGCTGCAAGTGAAGGCGAAAGCCAAGGTGAACACGAAGGAAGCGAGGAACCGAAGGCAGATGCAAAGAAGGATAAAAGGGCGTCTTCGAAATCAAGGAAAAATTCTTCAGAGAAAAAAGGGAAAAAAGATTCTAGTTTAAAGGAGCCGGTCACGCCAACGATTGAGAGGCCAGCCAGGGAGAGAAAGACAGTAGAGCGGTATTCCGTTCCATCGCCAGGCAGGTTGGGGAGGTCTTCTGCAAGCAAAGTTCTCTCAATTGACAAGGGCCGCGGCACTAGCCTCAAGGATATTCCAAATGTGGCTTTCAAACTCTCAAAGAGAAAAGCTGATGACAATCTGCAACTACTTCATACAATTCTGTTCGGAAAGAAAGCAAAGGCTCAAACCTTGAAGAGGAATATAAGCCAGTTTTCAGGTTATGTTTGGGTTGAGAATGAGGAAAAGCAAAGGTCAAAGGTAAAGGAGAAGCTTGAGAAGTGCGTCAAAGAAAAATTGGTGGATTTTTGTGATGTGCTAAATATCCCAATAAACAAAGCCAGTGTAAAGAAGGAGGAACTCTCAGCAAAGTTATTAGAATTTTTGGAGTCACCACATGCTACAACTGATGTTTTGCTGGCTGACAAGGAGCAGAAGGGCAAAAAGCGACGGAGGGCTAGTTCGGGCAAGGTGGTTGGTTCTGGAGAATCTGCAGAAGTGCCTGCTAAGAAACAAAAATCTCAGCCTACAAAGAAGAGAAAACATAGGCCTGATGTTGAGGAAGAAGAGGATGATAAAGTTGAAACTTCAAAAGAGAAGGATGGTTCTCACGATAAGGACGATGATGACGATGATGTGATTGCATGGAAAGAAGAAAATGATGAAAACGATAAATCAGACGAGGATGATAAGACACCAGAGAAAATGTCTAGTCCAAAGAAGTCATCTAAGAAGGCTGGCAAAGATGATTCTGGGTCTAAATCTGTTGAAAAACCTTCTACAAAGAAAGCTGCTGTGAAATCTGCTAAAGGTGCTGCAAAATCAACAAAAAAATCATCTGATTCAGCTTCAAACAAAGTTGATGCTGTCAAATCTGCTGGCTCACCATCAAAACCTAAGGGCACGTCAAAAAAGCAAAAAGTTGAGGAAAAGAAACCTGTAAAGGAAAAATCTTCGGGCAAGAAACAAACAAGCAAAGCCCCTGCAAAGGTTTTGGTTGAAGAACAAGGCAAGGGAAAAAACAGCAAGAAAGTTAAGAAAGAACCCAGCAGAGAGGAGATGCATGAAGTTGTAGTTAATATTCTGAAGCAAGTTGATTTTAATACTGCGACTTTGTCTGACATTCTCAGGCAGCTTGGTACCCACTTTGGTGTGGATTTGATGCATAGGAAAGCAGAGGTGAAGGATATTATCACAGATGTGATAAATAACATGAGTGATGAAGAAGAGGAAGCTGATGATGACGGTGGTGATGATACAGACAAAGACGAGGATGCTTAG 1818 43.45 MASENLEDKKAEDEAPVHVTNQDTKVEEHAPQPPNPQIEHTDVPDKEQATTAVGGPEEVNGDVKAQESNKQKGDLEIQEAAEEQGTTANDEPEEKTVDKKGEDSAEEEHEGHNEAASEGESQGEHEGSEEPKADAKKDKRASSKSRKNSSEKKGKKDSSLKEPVTPTIERPARERKTVERYSVPSPGRLGRSSASKVLSIDKGRGTSLKDIPNVAFKLSKRKADDNLQLLHTILFGKKAKAQTLKRNISQFSGYVWVENEEKQRSKVKEKLEKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVPAKKQKSQPTKKRKHRPDVEEEEDDKVETSKEKDGSHDKDDDDDDVIAWKEENDENDKSDEDDKTPEKMSSPKKSSKKAGKDDSGSKSVEKPSTKKAAVKSAKGAAKSTKKSSDSASNKVDAVKSAGSPSKPKGTSKKQKVEEKKPVKEKSSGKKQTSKAPAKVLVEEQGKGKNSKKVKKEPSREEMHEVVVNILKQVDFNTATLSDILRQLGTHFGVDLMHRKAEVKDIITDVINNMSDEEEEADDDGGDDTDKDEDA 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 73591344 73597073 + Tan0000380.1 Tan09g2398 764741

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g2398 605 MobiDBLite consensus disorder prediction 391 406 - -
Tan09g2398 605 MobiDBLite consensus disorder prediction 515 532 - -
Tan09g2398 605 MobiDBLite consensus disorder prediction 318 532 - -
Tan09g2398 605 MobiDBLite consensus disorder prediction 63 79 - -
Tan09g2398 605 MobiDBLite consensus disorder prediction 88 181 - -
Tan09g2398 605 MobiDBLite consensus disorder prediction 452 480 - -
Tan09g2398 605 FunFam DEK domain-containing chromatin associated protein 519 583 - -
Tan09g2398 605 MobiDBLite consensus disorder prediction 1 198 - -
Tan09g2398 605 SUPERFAMILY DEK C-terminal domain 521 582 - -
Tan09g2398 605 MobiDBLite consensus disorder prediction 582 605 - -
Tan09g2398 605 PANTHER DEK PROTEIN 57 593 IPR044198 GO:0003677(InterPro)|GO:0005634(PANTHER)|GO:0006325(InterPro)|GO:0042393(PANTHER)|GO:2000779(PANTHER)
Tan09g2398 605 Coils Coil 63 83 - -
Tan09g2398 605 Coils Coil 257 277 - -
Tan09g2398 605 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 527 582 IPR014876 -
Tan09g2398 605 Pfam DEK C terminal domain 528 580 IPR014876 -
Tan09g2398 605 MobiDBLite consensus disorder prediction 407 443 - -
Tan09g2398 605 Gene3D - 520 583 - -
Tan09g2398 605 MobiDBLite consensus disorder prediction 359 390 - -
Tan09g2398 605 MobiDBLite consensus disorder prediction 1 25 - -
Tan09g2398 605 MobiDBLite consensus disorder prediction 481 502 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g2398 K17046 - - csv:101211154 666.766
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1860 Tan-Chr1:19801432 Tan09g2398 Tan-Chr9:73591344 5.20E-50 dispersed
Tan01g1861 Tan-Chr1:19801432 Tan09g2398 Tan-Chr9:73591344 1.40E-47 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g70 . . Bda06g00718 Bda15g00682 Bpe12g00471 . . Bma12g01088 . . Cma10g00046 Cma11g00021 Car10g00035 Car11g00020 Sed12g2525 . Cpe04g01627 Bhi02g00660 Tan09g2398 Cmetu02g1444 . Hepe09g0033 . . Cla06g01759 Cam06g1951 Cec06g2000 Cco06g2006 Clacu06g1908 Cmu06g1848 Cre06g2662 . . Cone13ag0236 Cone19ag0222 . . . . . Blo15g00199 . . Bpe07g00898 . . Bma08g00267 . Cmo10g00041 Cmo11g00021 . . . . . Cpe18g00919 . . . . . . . . . . . . . . Lsi06g01657 Csa01g00038 Chy02g02681 Cme02g02085
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009134 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34