Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g2420 ATGATAGACTTTGCTCGCGTGCAAAAGGAGCTTCAAGAATGCAGTAAAGACATTGAGGCTTCGGGTATTAGAGTCACCCCCAAAGCCGATAATCTTTCCCATTTGGTCGGAACCATTCCTGGTCCTCTCGCTACTCCTTACGAAGGTGGTACCTTCCAAATCGATATCACATTGCCAGATGGGTATCCATTTGAGCCCCCTAAAATGCAGTTTGCTACAAAAGTCTGGCACCCTAATATCAGTAGTCAAAGTGGTGCAATTTGCCTGGATATTTTGAAGGATCAGTGGAGCCCAGCACTTACGTTGAAGACAGCCCTGCTTTCTGTGCAGGCATTGCTTTCTGCTCCTCAACCCGATGATCCTCAAGATGCTGTCGTGGCGCAACAGTATCTTAGAGACTATCAGACCTTTGCTGGCACAGCTCGATATTGGACAGAAACTTTTGCCAAGACGTCATCTCTTGGAGTGGAAGAAAAGGAAATGGTGCAGGTTCAGAAACTTGTGGAAATGGGATTCCCGGAGGCTCAAGTAAGGAGCAGTTTGGAAGCTGTGGGTTGGGATGAAAATTTGGCACTGGAAAAGCTCTGCTCCGGCTAA 597 47.4 MIDFARVQKELQECSKDIEASGIRVTPKADNLSHLVGTIPGPLATPYEGGTFQIDITLPDGYPFEPPKMQFATKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPQPDDPQDAVVAQQYLRDYQTFAGTARYWTETFAKTSSLGVEEKEMVQVQKLVEMGFPEAQVRSSLEAVGWDENLALEKLCSG 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 73801755 73804554 - Tan0011782.2 Tan09g2420 764763

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g2420 198 Pfam Ubiquitin-conjugating enzyme 6 144 IPR000608 -
Tan09g2420 198 SMART ubc_7 5 150 - -
Tan09g2420 198 SUPERFAMILY UBA-like 146 198 IPR009060 GO:0005515(InterPro)
Tan09g2420 198 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 2 150 IPR000608 -
Tan09g2420 198 FunFam ubiquitin-conjugating enzyme E2 27 1 152 - -
Tan09g2420 198 CDD UBCc 6 145 IPR000608 -
Tan09g2420 198 Gene3D - 144 198 - -
Tan09g2420 198 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 155 198 IPR015940 -
Tan09g2420 198 SUPERFAMILY UBC-like 5 151 IPR016135 -
Tan09g2420 198 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 76 92 IPR023313 -
Tan09g2420 198 Gene3D Ubiquitin Conjugating Enzyme 3 143 IPR016135 -
Tan09g2420 198 SMART uba_6 160 197 IPR015940 -
Tan09g2420 198 Pfam UBA/TS-N domain 163 195 IPR015940 -
Tan09g2420 198 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 6 147 IPR050113 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g2420 K04649 - - csv:101209270 377.481
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g2420 Tan-Chr9:73801755 Tan10g0165 Tan-Chr10:1766030 3.50E-31 dispersed
Tan09g2419 Tan-Chr9:73801755 Tan09g2420 Tan-Chr9:73801755 1.70E-107 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g46 . . . Bda15g00687 Bpe12g00466 . . . . . Cma10g00034 . Car10g00024 . Sed12g2540 . . Bhi02g00643 Tan09g2420 Cmetu02g0270 . . . . Cla06g01771 Cam06g1963 Cec06g2014 Cco06g2021 Clacu06g1921 Cmu06g1862 Cre06g2675 . . Cone13ag0249 Cone19ag0229 . . . . . Blo15g00101 . . . . . Bma08g00271 . Cmo10g00030 . . . . . . . . . . . . . . . . . . . . . Lsi06g01668 Csa01g00023 Chy02g02690 Cme02g02097
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009524 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 4 1 1 1 0 1 1 2 1 33