Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g2434 ATGGCTAGAGTTCTGGTTCAGTCGACAAATATTCCTGGTCTGGTCGGTGGAAGAAAGAATGGTCTATCAAGAGGATCGGTAAATGTAAAACGGGCTGTTAAAATGATGGCCAACGTACATGCACCTGGTTTGAGAATAAGAAGCTTCTCTGGACTTAGAGGATTTAATTCTTTGGATAACATGTTGAGAACTGGACAAGATTTTCATTCTAAGATGGCCATTACAATCTCTCCTAGGCGACGAAAGGCTAGCAGATGTGTTCCAAGAGCCATGTTTGAGCGATTCACAGAAAAGGCAATCAAGGTTATCATGCTTGCCCAGGAGGAAGCAAGGCGGCTTGGTCATAATTTTGTTGGCACAGAGCAGATACTTTTAGGTCTTATCGGCGAAGGCACTGGTATCGCTGCTAAGGTTCTTAAATCCATGGGAATTAATCTTAAAGATGCCCGCGTGGAGGTGGAGAAGATAATTGGTCGGGGCAGCGGGTTTGTTGCTGTAGAAATTCCCTTCACTCCTCGTGCAAAGCGTGTTTTGGAACTTTCTCTCGAGGAAGCTCGCCAACTTGGCCACAATTATATCGGGTCAGAGCACTTGCTTCTGGGACTACTTCGTGAAGGTGAGGGCGTTGCAGCTCGTGTTCTTGAAAACTTAGGTGCTGATCCTAGTAACATTCGCACTCAGGTTATTCGAATGGTGGGTGAGAGCACAGAGGCTGTTGGTGCTGGTGTTGGAGGAGGGAGCAGTGGGAACAAGATGCCAACTCTGGAAGAGTATGGCACAAACTTAACTAAGCTGGCTGAAGAGGGTAAACTAGATCCTGTCGTTGGAAGGCAGCAGCAAATTGAACGTGTAACCCAAATTTTGGGTCGGCGGACAAAAAATAATCCTTGCCTGATTGGCGAGCCTGGTGTTGGGAAAACTGCTATTGCAGAAGGTCTGGCACAAAGGATTGCTAATGGGGATGTTCCTGAAACAATAGAAGGAAAGAAGGTCATAACCCTGGATATGGGCCTTCTTGTAGCTGGCACAAAATATCGTGGAGAGTTTGAGGAAAGATTAAAGAAACTGATGGAGGAAATTAAACAAAGTGATGAGATTATCCTTTTTATAGATGAGGTGCACACACTAATTGGAGCAGGGGCTGCAGAAGGAGCTATTGATGCGGCAAATATATTAAAACCTGCCCTTGCAAGAGGTGAACTGCAGTGCATTGGAGCCACAACATTGGATGAATACAGGAAGCACATTGAGAAAGATCCAGCCTTAGAAAGGAGATTTCAGCCAGTCAAGGTGCCGGAACCATCCGTGGATGAAACCATACAGATTTTGAAAGGCCTTAGAGAGCGTTATGAAATCCACCACAAACTTCGATATACGGATGAAGCATTAGTAGCTGCTGCACAGCTGTCATACCAGTACATCAGTGATCGATTCTTGCCTGATAAGGCAATTGACTTGGTTGATGAAGCTGGTTCTCGGGTTCGCCTTCGTCATGCACAACTACCTGAGGAAGCTAGGGAGCTTGAGAAAGAGCTGAGGCAGATCACAAAGGAGAAGAATGAGGCTGTTCGAAGTCAGGACTTTGAGAAGGCTGGAGAATTGCGTGATAGAGAAATGGAACTTAAGACTAAGATCTCGGCTCTAGTAGATAAGGGCAAGGAAATGAGCAAGGCTGAAAGCGAGGCAGGAGATGTAGGCCCTGTTGTGACTGAAGTTGATATTCAGCATATTGTTTCCTCCTGGACAGGCATTCCTGTTGAGAAAGTATCTACTGATGAATCCGACCGCCTTCTCAAAATGGAAGAAACCCTCCACAAGAGGGTCATTGGTCAAGATGAAGCAGTTAAAGCCATCAGCCGTGCAATACGTCGAGCTCGTGTTGGTCTCAAGAATCCCAATCGTCCAATTGCAAGCTTTATATTTTCTGGTCCAACTGGTGTTGGTAAATCTGAGTTAGCAAAAGCGTTGGCTGCATACTATTTTGGCTCTGAAGAAGCAATGATTCGACTTGACATGAGTGAATTCATGGAAAGGCATACCGTCTCCAAGCTCATTGGTTCCCCTCCTGGTTATGTTGGCTACACAGAGGGTGGTCAATTAACTGAGGCTGTTCGTCGTCGTCCATACACAGTAGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTGTTCAACATGATGCTTCAAATTTTGGAGGACGGAAGGTTGACGGATAGCAAGGGTAGAACTGTAGACTTCAAAAATACACTCTTGATAATGACATCAAACGTGGGAAGCAGTGTTATAGAGAAGGGAGGTCGCAGAATAGGGTTTGACCTTGATTATGATGAGAAGGATAGTAGTTATAACCGGATCAAGAGCTTGGTGACAGAGGAACTGAAACAGTACTTCAGGCCTGAGTTTTTGAATAGGTTGGACGAGATGATTGTATTCCGTCAGCTCACAAAGCTGGAGGTGAAGGAGATTGCGGATATAATGCTGAAGGAGGTATTTGATAGATTAAAAGCAAAAGAAATTGAACTTCAAGTGACAGAGAGATTTAGAGATAGAGTGGTTGAGGAAGGATATAACCCAAGCTATGGTGCGAGACCATTGAGAAGGGCAATCATGAGACTTTTGGAGGACAGCATGGCTGAGAAGATGCTGGCAAGGGAGATCAAGGAGGGTGATTCGGTAATAGTGGATGTTGATTCAGACGGAAACGTGACAGTGCTAAACGGCAGCAGTGGTGCTCCCGAGTCCTTGCCGGATGCTATCCCCGTCTAG 2769 45.54 MARVLVQSTNIPGLVGGRKNGLSRGSVNVKRAVKMMANVHAPGLRIRSFSGLRGFNSLDNMLRTGQDFHSKMAITISPRRRKASRCVPRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQQQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSYQYISDRFLPDKAIDLVDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRSQDFEKAGELRDREMELKTKISALVDKGKEMSKAESEAGDVGPVVTEVDIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKAKEIELQVTERFRDRVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVTVLNGSSGAPESLPDAIPV 922
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 73892477 73900513 - Tan0017749.1 Tan09g2434 764777

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g2434 922 Gene3D UVR domain 501 565 - -
Tan09g2434 922 PANTHER ATP-DEPENDENT CLP PROTEASE 93 902 IPR050130 GO:0005737(PANTHER)|GO:0016887(PANTHER)|GO:0034605(PANTHER)
Tan09g2434 922 FunFam ATP-dependent Clp protease ATP-binding subunit ClpC 91 239 - -
Tan09g2434 922 Gene3D - 815 911 - -
Tan09g2434 922 FunFam ATP-dependent Clp protease subunit 588 813 - -
Tan09g2434 922 CDD AAA 275 427 - -
Tan09g2434 922 Pfam AAA domain (Cdc48 subfamily) 634 808 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Tan09g2434 922 Gene3D - 91 239 IPR036628 -
Tan09g2434 922 SMART ClpB_D2_small_2 815 905 IPR019489 -
Tan09g2434 922 Gene3D - 245 435 IPR027417 -
Tan09g2434 922 ProSiteProfiles Clp repeat (R) domain profile. 92 234 IPR004176 -
Tan09g2434 922 ProSitePatterns Chaperonins clpA/B signature 1. 387 399 IPR018368 GO:0005524(InterPro)
Tan09g2434 922 Coils Coil 346 366 - -
Tan09g2434 922 FunFam Chaperone clpB 1, putative 243 435 - -
Tan09g2434 922 FunFam ATP-dependent chaperone ClpB 815 907 - -
Tan09g2434 922 Pfam ATPase family associated with various cellular activities (AAA) 297 409 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Tan09g2434 922 SMART AAA_5 292 432 IPR003593 GO:0016887(InterPro)
Tan09g2434 922 SMART AAA_5 635 816 IPR003593 GO:0016887(InterPro)
Tan09g2434 922 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 584 901 IPR027417 -
Tan09g2434 922 Pfam AAA lid domain 435 536 IPR041546 -
Tan09g2434 922 ProSitePatterns Chaperonins clpA/B signature 2. 669 687 IPR028299 -
Tan09g2434 922 Gene3D - 437 581 - -
Tan09g2434 922 CDD RecA-like_ClpB_Hsp104-like 596 812 - -
Tan09g2434 922 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 746 760 IPR001270 GO:0005524(InterPro)
Tan09g2434 922 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 713 731 IPR001270 GO:0005524(InterPro)
Tan09g2434 922 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 639 657 IPR001270 GO:0005524(InterPro)
Tan09g2434 922 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 684 702 IPR001270 GO:0005524(InterPro)
Tan09g2434 922 SUPERFAMILY Double Clp-N motif 93 233 IPR036628 -
Tan09g2434 922 Pfam C-terminal, D2-small domain, of ClpB protein 815 895 IPR019489 -
Tan09g2434 922 Pfam Clp amino terminal domain, pathogenicity island component 182 233 IPR004176 -
Tan09g2434 922 Pfam Clp amino terminal domain, pathogenicity island component 106 158 IPR004176 -
Tan09g2434 922 Coils Coil 498 525 - -
Tan09g2434 922 FunFam ATP-dependent Clp protease ATP-binding subunit 436 520 - -
Tan09g2434 922 Gene3D - 587 813 IPR027417 -
Tan09g2434 922 ProSiteProfiles UVR domain profile. 509 544 IPR001943 GO:0005515(InterPro)
Tan09g2434 922 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 252 534 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g2434 K03696 - - csv:101207083 1696.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2488 Tan-Chr1:33100521 Tan09g2434 Tan-Chr9:73892477 0.00E+00 dispersed
Tan01g3263 Tan-Chr1:87896841 Tan09g2434 Tan-Chr9:73892477 6.80E-200 dispersed
Tan04g1804 Tan-Chr4:53944082 Tan09g2434 Tan-Chr9:73892477 1.70E-203 dispersed
Tan09g2052 Tan-Chr9:71037574 Tan09g2434 Tan-Chr9:73892477 6.60E-155 dispersed
Tan09g2434 Tan-Chr9:73892477 Tan05g2372 Tan-Chr5:75095149 3.60E-187 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g30 . . . . Bpe12g00459 . . . . . . . . . Sed01g1068 . Cpe04g01638 Bhi02g00620 Tan09g2434 Cmetu06g1260 . Hepe09g0012 . . . . . . . . . . . . . . . . . . . . . . . . Bma08g00280 . . . . . . . . . . . . . . . . . . . . . . . . . Chy02g02702 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002235 2 2 2 1 2 2 3 2 2 2 2 2 4 2 2 4 2 2 4 2 2 1 2 2 2 2 1 2 2 1 63