Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g2439 ATGTTAAATGGAAAGAGAAAGAGAAACCCTATCCAATCCATGCTCTTGTCCTTTTTAGGTTTTGAAGCAACGCAGGTTGTAAAAGTGGATCCGAGGCATGGGAAGAGACCCTTTTCTTCCGATGAATCGGAGGAAGATAACCCGTTTCCAATCTACTCGGCTAGATCTCAGCATGACATGTCAGCCATGGTTTCTGCCCTAGCTCAAGTGATCAGTAGTACGAGTAGTGGCAGTAGTAGCAGAAACCCGGTAGAAGTAAACCCTACAACAACAACAACAACATCAGCAGATGCAGATGCAGAAGGAAGCAGGATGATGATGATGAGAAGACATTATCGAGGAGTAAGGCAGAGACCTTGGGGAAAATGGGCGGCTGAGATTCGTGACCCGAAAAAGGCAGCAAGAGTGTGGCTGGGCACCTTCGACACTGCCGAGGCTGCGGCAATTGCTTACGATGAAGCTGCCCTCAGATTCAAAGGAACCAAAGCCAAGCTCAACTTCCCTGAGAGACTAGTCGTCCAACAATTCCCCATCCCCGTTTCTCCTTCTCCTCCACCTCTTCACTATGCACCAACACCACCACCACCACCACCCTTTAATAATTTACACTTAAACACCTCATCATATAATCCCTTTATCTTCAATCTCCAGAACGCTTCTACATCTGATCATGATCAACACCACCCTCATCCTCAACACCCTTCTCCTAATTCTCCTAATTCTGGCGATCACAAACACCACGTTTAG 747 46.99 MLNGKRKRNPIQSMLLSFLGFEATQVVKVDPRHGKRPFSSDESEEDNPFPIYSARSQHDMSAMVSALAQVISSTSSGSSSRNPVEVNPTTTTTTSADADAEGSRMMMMRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDEAALRFKGTKAKLNFPERLVVQQFPIPVSPSPPPLHYAPTPPPPPPFNNLHLNTSSYNPFIFNLQNASTSDHDQHHPHPQHPSPNSPNSGDHKHHV 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 73955219 73956066 + Tan0019973.1 Tan09g2439 764782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g2439 248 Gene3D AP2/ERF domain 110 170 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g2439 248 Pfam AP2 domain 111 160 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g2439 248 ProSiteProfiles AP2/ERF domain profile. 111 168 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g2439 248 MobiDBLite consensus disorder prediction 32 52 - -
Tan09g2439 248 PANTHER DNA-BINDING DOMAIN 69 220 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Tan09g2439 248 MobiDBLite consensus disorder prediction 73 99 - -
Tan09g2439 248 MobiDBLite consensus disorder prediction 219 248 - -
Tan09g2439 248 CDD AP2 111 169 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g2439 248 SUPERFAMILY DNA-binding domain 111 169 IPR016177 GO:0003677(InterPro)
Tan09g2439 248 PRINTS Ethylene responsive element binding protein signature 112 123 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g2439 248 PRINTS Ethylene responsive element binding protein signature 134 150 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan09g2439 248 MobiDBLite consensus disorder prediction 73 100 - -
Tan09g2439 248 FunFam Ethylene-responsive transcription factor 2 110 169 - -
Tan09g2439 248 SMART rav1_2 111 174 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g1437 Tan-Chr6:19171204 Tan09g2439 Tan-Chr9:73955219 4.50E-30 dispersed
Tan09g2439 Tan-Chr9:73955219 Tan10g1739 Tan-Chr10:47951134 3.30E-26 dispersed
Tan09g2439 Tan-Chr9:73955219 Tan03g1368 Tan-Chr3:70165817 4.60E-28 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28449 PF00847 AP2 3.00E-14 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g2439 - - - 0.0