Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g2440 ATGGCGCAGGTTTCTCAGTTGCCTTGCGACGGCGATGGCATTTGCATGCTCTGCCAGGCCAAGCCTTCCGACTTGGAGACGATCACTTGCAAAACTTGCGTCACCCCTTGGCACGTTGGTTGTCTCTTAAATCCCCCTGAAACCCTGGCATATACCCTTAAATGGGACTGTCCCGACTGTTCCCCCCCTCCCGAAGATGCTCCCCCTCATCCACTCGGCAACTGTCCACTCCCCACTGCGCCTTCCAGTGACCTGGTTGCTGCGATTCGGGCCATTGAGGCCGATGCCTCCCTTACTGACCGCGAGAAGGCGAAGAAGCGCCAGGAGCTTCTCAGTGGAAAGTCTCAGTCCGAGAAGGATGATCATGATGCCAGAAAGGAAAAGAGGAAAAAGGGGGACGATGTTTTGGATTTGTTCGACGAGAGATTGAACTGTTCCTTCTGCATGCAATTACCAGAAAGGCCAGTCACTACTCCATGTGGCCACAATTTCTGCTTAAAATGTTTCCAGAAGTGGATTGGACAAGGAAAGAATACTTGTGCAAAGTGCCGCTGTGTGATTCCCTCCAAAATGGCTAGCCAGCCCCGTATTAATTCCACACTTGTAGTGGCCATTCGTATGGCTAAAATGTCAAAAACAATTGTTTCTGGAGGACCTCAGAAGGTTTATCATTTTGTCCACAATCGAAATAGGCCAGATAAAGCCTATACCACTGACCGGGCACAAAAAAAGGGGAAAGCTAATGCTGCAAGTGGAAAAATATTTGTTACAATTCCATCGGATCATTTTGGTCCTATTCCTGCTGAAAATGATCCTGAGAGAAACCAGGGTGTTCTTGTTGGTGAATGCTGGGAGGATAGGCTAGAATGTCGTCAGTGGGGTGCTCACTTTCCACATGTTGCAGGTATAGCTGGGCAGTCAAATAATGGTGCACAATCAGTGGTTCTTTCTGGTGGCTACCAGGATGATGAAGATCATGGGGAGTGGTTCCTCTACACTGGAAGTGGGGGTCGAGACCTTAGTGGGAACAAGCGTACAAGCAAGGATCAGTCTTTTGACCAGAAATTTGAAAAATCAAACAAAGCGCTACAAGTTAGTTGCTTAAAAGGTTATCCTGTTAGGGTTGTTAGATCTCACAAAGAAAAACGTTCCTCATATGCTCCAGAAAAGGGGTTGCGGTATGATGGAATTTATAGGATTGAGAAGTGTTGGCGTAAAGTGGGAATTCAGGGTTTTAAGGTATGTCGGTATTTATTTGTTAGATGCGACAATGATCCTGCTCCATGGACAAGCGATGAACATGGAGATCGACCTAGACCCTTACCTGCAATTCCAGAGTTAAAAAAAGCGACAGATATTACAGAGAGGAAGGAAGGTCCATCATGGGACTTCGATGAGAAAGATAGTCGGTGGAAGTGGAGCAAACCTCCACCAACGAGCAAGAAACCAGTTGAAACCGAAGATTCTGCTTCTGGGAAGAGGTCAAGGAGAAGAATTAGGCAATCGCATAATATGAATGTCCGAGAAAGGTTACTGAAAGAGTTTAGCTGCCTTATTTGCCGGGAGGTGATGAGTCTGCCAATTACTACGCCTTGTGCCCATAACTTTTGCAAGTCATGTTTGGAAGGTGCTTTTGTGGGCAAGACATTCTTGAGAGAGAGAAGCAGTGGCGGACGGGCTCTTAGATCCCAGAAGAATGTCATGACTTGTCCTTGTTGCCCGACAGATATATCTGATTTCCTACAGAATCTTCAGGTAAATAGAGAGTTGTTGGATGTGATCGAGTCATTGAAAAATAAGATTGAAGAAGAAGGGGATGCATCTGAGAAGCTCTGTGAAGATGGGGGGGAAGGGGAACAGGATGAGGATGAGGAAGAGGAAGAGGATGAGGATGAAGAGGGAAAAGATGGAAGCAACGGAAATGAAAGCAGCCGTCCTGTGGAAACAAGAAAGCGAGCAAAGGTGGTGGTTAATGGTGGAGAGGAAAATGGTGTGGGCGGTGGTGGAGACGATTCGCCCTCAAGCCCCCTCCACGTGGATGATTTGGAATGA 2052 47.12 MAQVSQLPCDGDGICMLCQAKPSDLETITCKTCVTPWHVGCLLNPPETLAYTLKWDCPDCSPPPEDAPPHPLGNCPLPTAPSSDLVAAIRAIEADASLTDREKAKKRQELLSGKSQSEKDDHDARKEKRKKGDDVLDLFDERLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKNTCAKCRCVIPSKMASQPRINSTLVVAIRMAKMSKTIVSGGPQKVYHFVHNRNRPDKAYTTDRAQKKGKANAASGKIFVTIPSDHFGPIPAENDPERNQGVLVGECWEDRLECRQWGAHFPHVAGIAGQSNNGAQSVVLSGGYQDDEDHGEWFLYTGSGGRDLSGNKRTSKDQSFDQKFEKSNKALQVSCLKGYPVRVVRSHKEKRSSYAPEKGLRYDGIYRIEKCWRKVGIQGFKVCRYLFVRCDNDPAPWTSDEHGDRPRPLPAIPELKKATDITERKEGPSWDFDEKDSRWKWSKPPPTSKKPVETEDSASGKRSRRRIRQSHNMNVRERLLKEFSCLICREVMSLPITTPCAHNFCKSCLEGAFVGKTFLRERSSGGRALRSQKNVMTCPCCPTDISDFLQNLQVNRELLDVIESLKNKIEEEGDASEKLCEDGGEGEQDEDEEEEEDEDEEGKDGSNGNESSRPVETRKRAKVVVNGGEENGVGGGGDDSPSSPLHVDDLE 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 73956594 73964022 - Tan0005160.1 Tan09g2440 764783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g2440 683 ProSitePatterns Zinc finger RING-type signature. 532 541 IPR017907 -
Tan09g2440 683 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 3 628 IPR045134 GO:0010216(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Tan09g2440 683 MobiDBLite consensus disorder prediction 604 683 - -
Tan09g2440 683 SMART PHD_3 14 61 IPR001965 -
Tan09g2440 683 MobiDBLite consensus disorder prediction 101 131 - -
Tan09g2440 683 Pfam RING-type zinc-finger 517 548 IPR027370 -
Tan09g2440 683 Gene3D - 244 440 IPR036987 -
Tan09g2440 683 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 212 IPR013083 -
Tan09g2440 683 Pfam Zinc finger, C3HC4 type (RING finger) 145 183 IPR018957 GO:0046872(InterPro)
Tan09g2440 683 Coils Coil 587 614 - -
Tan09g2440 683 SMART ring_2 145 183 IPR001841 -
Tan09g2440 683 SMART ring_2 517 573 IPR001841 -
Tan09g2440 683 SUPERFAMILY PUA domain-like 247 442 IPR015947 -
Tan09g2440 683 Pfam SAD/SRA domain 275 424 IPR003105 -
Tan09g2440 683 ProSiteProfiles YDG domain profile. 273 421 IPR003105 -
Tan09g2440 683 SMART G9a_1 268 425 IPR003105 -
Tan09g2440 683 SUPERFAMILY RING/U-box 136 191 - -
Tan09g2440 683 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 496 616 IPR013083 -
Tan09g2440 683 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 91 212 - -
Tan09g2440 683 ProSiteProfiles Zinc finger RING-type profile. 145 184 IPR001841 -
Tan09g2440 683 ProSiteProfiles Zinc finger RING-type profile. 517 573 IPR001841 -
Tan09g2440 683 MobiDBLite consensus disorder prediction 429 475 - -
Tan09g2440 683 MobiDBLite consensus disorder prediction 615 636 - -
Tan09g2440 683 SUPERFAMILY FYVE/PHD zinc finger 8 63 IPR011011 -
Tan09g2440 683 ProSitePatterns Zinc finger PHD-type signature. 15 60 IPR019786 -
Tan09g2440 683 MobiDBLite consensus disorder prediction 429 503 - -
Tan09g2440 683 CDD RING-HC_ORTHRUS_rpt1 141 188 IPR047498 -
Tan09g2440 683 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 244 439 - -
Tan09g2440 683 SUPERFAMILY RING/U-box 510 599 - -
Tan09g2440 683 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 71 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g1783 Tan-Chr9:69369748 Tan09g2440 Tan-Chr9:73956594 0.00E+00 dispersed
Tan09g1784 Tan-Chr9:69369748 Tan09g2440 Tan-Chr9:73956594 8.60E-287 dispersed
Tan09g2440 Tan-Chr9:73956594 Tan10g0614 Tan-Chr10:5044168 1.90E-20 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g2440 K10638 - csv:116401648 1118.61