Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan09g2441 ATGGATCCAGAAGCCCTCTCCGCCACTTTGTTCAAATGGGATCCTCGAGGAATGGTGGGGGGAGGCGGCGGCGCACCACTCCCAGCACCACTGCCGCCCTACTCGCTGCGGCCCAGGGAGTTGGGACTGGGAGGCCTGGAAGACTTGTTCCAGGCGTACGGGATCAGGTACTACACCGCCGCTAAAATTGCGGAACTCGGATTCACCGTCAGCACCCTCCTCGACATGAAAGACGAAGAGTTGGAGGACATGATGAACAGCATCTCTCACATTTTTCGCTGGGAGCTTCTGGTGGGTGAGAGATACGGAATTAAGGCTGCTGTAAGAGCCGAGCGCAGACGTCTAGATGACGAGATCGATTCCTCCAGGCGCCGTCACCTCTTGTCCAACGACACCACTACCAACGTTGTCCTCGATGCCCTTTCTCAGGAAGGGCTATCGGAAGAGCCGGTGCAGCAGGAGAAGGAGGTGGTGGGGAGCGGAGGAGGAGGAACGTGGGAGGCAGTTGCTGCGGCTGAGATCAGGAAGAAGCAGCGGAGGAGAAACGGATCAAAGAAGAAGCAGGTGATGGTGATGGAGGAGGATCACGATGAAAACGATGGAGCTGGGGACGAGGAGGATAATATGGAAGTCAGCGAGAGACAGCGGGAGCATCCATTCATCGTAACAGAGCCAGGGGAGGTTGCGCGGGGAAAGAAGAACGGCCTCGACTATCTCTTCCACCTCTATGAGCAGTGTCGTGAATTTTTGATCCAAGTCCAGAACATTGCAAAGGAACGAGGAGAAAAGTGTCCCACTAAGGTGACGAACCAAGTGTTTAGATACGCGAAAAAGGCGGGAGCAAGTTACATAAACAAGCCAAAAATGAGACACTACGTCCACTGCTATGCGCTGCATTGTCTGGAAGAGGAAGCGTCGAACGCATTGAGAAGGGCTTTCAAAGAAAGGGGTGAAAATGTGGGAGCTTGGCGACAGGCATGCTATAAGCCTCTGGTAGCCATAGCAGCTGCCCAAGGTTGGGACATCGATGCCATTTTCAACGCACATCCACGCCTAGCCATCTGGTATGTCCCTACCAAACTTCGCCAACTATGCCACGCCGAGCGCAACAGTGCCACAGCCTCCACCTCCGCCGCCGCCGATCACATGCCATTTTAA 1158 54.84 MDPEALSATLFKWDPRGMVGGGGGAPLPAPLPPYSLRPRELGLGGLEDLFQAYGIRYYTAAKIAELGFTVSTLLDMKDEELEDMMNSISHIFRWELLVGERYGIKAAVRAERRRLDDEIDSSRRRHLLSNDTTTNVVLDALSQEGLSEEPVQQEKEVVGSGGGGTWEAVAAAEIRKKQRRRNGSKKKQVMVMEEDHDENDGAGDEEDNMEVSERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNIAKERGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLEEEASNALRRAFKERGENVGAWRQACYKPLVAIAAAQGWDIDAIFNAHPRLAIWYVPTKLRQLCHAERNSATASTSAAADHMPF 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 74018185 74020187 - Tan0018940.1 Tan09g2441 764784

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan09g2441 385 PANTHER PROTEIN LEAFY 1 380 IPR002910 GO:0003677(InterPro)|GO:0006355(InterPro)
Tan09g2441 385 Pfam Floricaula / Leafy protein SAM domain 43 118 IPR035079 -
Tan09g2441 385 Coils Coil 105 125 - -
Tan09g2441 385 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 210 373 IPR035209 GO:0003677(InterPro)
Tan09g2441 385 Gene3D Protein LEAFY 211 379 IPR038276 -
Tan09g2441 385 MobiDBLite consensus disorder prediction 177 214 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan09g2441 - - - - 0.0
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan09g2441 . 1 378 Orphan Transcription Factor Family AT5G61850 69.1 7.1e-122 434.9
Tan06g1564 . 1 167 Orphan Transcription Factor Family AT1G06040 67.2 1.0e-58 223.8
Tan01g0919 . 1 109 Orphan Transcription Factor Family AT1G06040 67.9 2.0e-38 156.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007487 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 0 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28450 PF17538 C_LFY_FLO 1.20E-108 CL0123 Tan TF