Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0003 ATGGGTAAAGTGGAGTTAGGCGGTGTGGACGACCACGCTCTGGAGATGGACTTGGACTTGGACTTGGATGAAGAGGATCGGAGATACAGGAAGAAAACCAAGAAAGAGGCAGTGGACGTGGAGACGAAAGATATTCACCACGCAGAGGAAGATGGATCGCACAGGCTTTTACCGAAAACGGTGCTTAGTGTTCTGCTTGTTGAAGCTGATGATTCCACTCGCCGGATCATCGCCGCGCTCCTTCGCAAATGCAGTTACAGAGTTTCTGCTGTCCCTGATGGACTGAAGGCTTGGGAAACTTTGAAGGGAAGACCGCATAATGTTGATCTCATACTTACTGAAGTGGATTTGCCATCAATATCTGGTTATGCACTGCTAACATTAGTCATGGAGCACGACATTTGCAAAAATATTCCTGTTATAAGTATGTTCCTTTGA 438 46.58 MGKVELGGVDDHALEMDLDLDLDEEDRRYRKKTKKEAVDVETKDIHHAEEDGSHRLLPKTVLSVLLVEADDSTRRIIAALLRKCSYRVSAVPDGLKAWETLKGRPHNVDLILTEVDLPSISGYALLTLVMEHDICKNIPVISMFL 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 143696 145239 + Tan0012209.1 Tan10g0003 764797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0003 145 Gene3D - 63 143 - -
Tan10g0003 145 ProSiteProfiles Response regulatory domain profile. 63 145 IPR001789 GO:0000160(InterPro)
Tan10g0003 145 PANTHER TWO-COMPONENT RESPONSE REGULATOR 49 143 IPR045279 GO:0009736(InterPro)
Tan10g0003 145 Pfam Response regulator receiver domain 64 142 IPR001789 GO:0000160(InterPro)
Tan10g0003 145 SUPERFAMILY CheY-like 62 142 IPR011006 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan07g0542 Tan-Chr7:9036205 Tan10g0003 Tan-Chr10:143696 2.90E-33 dispersed
Tan10g0003 Tan-Chr10:143696 Tan09g2096 Tan-Chr9:71348710 1.20E-07 transposed
Tan10g0003 Tan-Chr10:143696 Tan05g2421 Tan-Chr5:75394197 1.20E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28451 PF00072 Response_reg 8.70E-11 CL0304 Tan TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0003 K12130 - gmx:100777119 158.688