Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0006 ATGCCATTTCTTCATATCCTGCAGAGTGTGTACCTAAAGAAGCCATGGGAAGAGGAAGTTAGTCAAATTGAGGAGCTTGTAGAGTTGTATTCTTCACCAGAAAAAAAGGACCAACAAAATCAACACCCAAATTCGGCTTCATGTACCGACGGAGTGAGTTCAGAGTGCAAGCAAAATCAACCCTTATTATGTCGGACCCAAATGATGGGAAAGGCTCCTCCTCCAGTCACCAAGGAAAGAAGGAAACGAAAGAGATCGAGACCAACTAAGAACAAGGAAGAAGTGGAGAGCCAAAGAATGATCCATATTGCCGTCGAGCGCAACCGGAGGCGGCAAATGAACGACCATCTCAACGTTATCAAGTCCTTCATACCTCCCTCCTATATACAGAGGGGTGATCAGGCATCCATAATTGGGGGTGCAATCGACTTCGTGAAGGAATTGGAGCAGCTACTTGAATCTTTGGGAGCACAGAGGAAAGAAAGGAAAGGACATGGAGATCAGGAAGGCTCACCAACATCCTCCTCAACAATGGGAATGGCCTCAAATGGGAGAATAGGAGAAGGGATTTGTGCAGAGCTCAAGTCAGAAGTGGCTGAGATAGAGGTGACCATGATTCAAACCCATGTAAACTTGAAGATAAAATGCCCCAAAAGGCAAGGTCAATTGTTGAAAGCAATTGTTGCTTTGGAAGATCTTGGGCTCAAAGTTTTGCATCTCAACATTACGACTTCACAACCCACTGCCACCATGCTTTACTCCTTCAATCTTAAGGCCGCCATCCAAGTGTTTCTCCCGCCTTCTCGCCTCTCAGATCCGAGCATCACGGATCTCTCATCCCGTCGTCACCTCTTTGTTCTGACCACCGTCAGTGACGCTTGTCGCCGTTCACGTGTTCCGATTCAACCATATTCGAACAAATTGTCGTCGGAGTATTTCTCCCGTCTTTTCGTGCACAGATCTGAGCAATAG 972 46.6 MPFLHILQSVYLKKPWEEEVSQIEELVELYSSPEKKDQQNQHPNSASCTDGVSSECKQNQPLLCRTQMMGKAPPPVTKERRKRKRSRPTKNKEEVESQRMIHIAVERNRRRQMNDHLNVIKSFIPPSYIQRGDQASIIGGAIDFVKELEQLLESLGAQRKERKGHGDQEGSPTSSSTMGMASNGRIGEGICAELKSEVAEIEVTMIQTHVNLKIKCPKRQGQLLKAIVALEDLGLKVLHLNITTSQPTATMLYSFNLKAAIQVFLPPSRLSDPSITDLSSRRHLFVLTTVSDACRRSRVPIQPYSNKLSSEYFSRLFVHRSEQ 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 272000 276105 + Tan0009116.1 Tan10g0006 764800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0006 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 97 148 IPR011598 GO:0046983(InterPro)
Tan10g0006 323 SMART finulus 103 154 IPR011598 GO:0046983(InterPro)
Tan10g0006 323 Gene3D - 88 164 IPR036638 GO:0046983(InterPro)
Tan10g0006 323 MobiDBLite consensus disorder prediction 33 54 - -
Tan10g0006 323 Pfam Helix-loop-helix DNA-binding domain 98 149 IPR011598 GO:0046983(InterPro)
Tan10g0006 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 97 164 IPR036638 GO:0046983(InterPro)
Tan10g0006 323 MobiDBLite consensus disorder prediction 66 97 - -
Tan10g0006 323 PANTHER TRANSCRIPTION FACTOR FAMA 42 265 IPR044283 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER)
Tan10g0006 323 MobiDBLite consensus disorder prediction 157 183 - -
Tan10g0006 323 Pfam Plant bHLH transcription factor, ACT-like domain 201 246 IPR054502 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g0006 Tan-Chr10:272000 Tan10g0526 Tan-Chr10:4203530 7.70E-36 dispersed
Tan10g0006 Tan-Chr10:272000 Tan10g0525 Tan-Chr10:4203530 7.70E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28452 PF00010 HLH 7.50E-08 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0006 - - - 0.0