Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan10g0006 | ATGCCATTTCTTCATATCCTGCAGAGTGTGTACCTAAAGAAGCCATGGGAAGAGGAAGTTAGTCAAATTGAGGAGCTTGTAGAGTTGTATTCTTCACCAGAAAAAAAGGACCAACAAAATCAACACCCAAATTCGGCTTCATGTACCGACGGAGTGAGTTCAGAGTGCAAGCAAAATCAACCCTTATTATGTCGGACCCAAATGATGGGAAAGGCTCCTCCTCCAGTCACCAAGGAAAGAAGGAAACGAAAGAGATCGAGACCAACTAAGAACAAGGAAGAAGTGGAGAGCCAAAGAATGATCCATATTGCCGTCGAGCGCAACCGGAGGCGGCAAATGAACGACCATCTCAACGTTATCAAGTCCTTCATACCTCCCTCCTATATACAGAGGGGTGATCAGGCATCCATAATTGGGGGTGCAATCGACTTCGTGAAGGAATTGGAGCAGCTACTTGAATCTTTGGGAGCACAGAGGAAAGAAAGGAAAGGACATGGAGATCAGGAAGGCTCACCAACATCCTCCTCAACAATGGGAATGGCCTCAAATGGGAGAATAGGAGAAGGGATTTGTGCAGAGCTCAAGTCAGAAGTGGCTGAGATAGAGGTGACCATGATTCAAACCCATGTAAACTTGAAGATAAAATGCCCCAAAAGGCAAGGTCAATTGTTGAAAGCAATTGTTGCTTTGGAAGATCTTGGGCTCAAAGTTTTGCATCTCAACATTACGACTTCACAACCCACTGCCACCATGCTTTACTCCTTCAATCTTAAGGCCGCCATCCAAGTGTTTCTCCCGCCTTCTCGCCTCTCAGATCCGAGCATCACGGATCTCTCATCCCGTCGTCACCTCTTTGTTCTGACCACCGTCAGTGACGCTTGTCGCCGTTCACGTGTTCCGATTCAACCATATTCGAACAAATTGTCGTCGGAGTATTTCTCCCGTCTTTTCGTGCACAGATCTGAGCAATAG | 972 | 46.6 | MPFLHILQSVYLKKPWEEEVSQIEELVELYSSPEKKDQQNQHPNSASCTDGVSSECKQNQPLLCRTQMMGKAPPPVTKERRKRKRSRPTKNKEEVESQRMIHIAVERNRRRQMNDHLNVIKSFIPPSYIQRGDQASIIGGAIDFVKELEQLLESLGAQRKERKGHGDQEGSPTSSSTMGMASNGRIGEGICAELKSEVAEIEVTMIQTHVNLKIKCPKRQGQLLKAIVALEDLGLKVLHLNITTSQPTATMLYSFNLKAAIQVFLPPSRLSDPSITDLSSRRHLFVLTTVSDACRRSRVPIQPYSNKLSSEYFSRLFVHRSEQ | 323 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 272000 | 276105 | + | Tan0009116.1 | Tan10g0006 | 764800 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan10g0006 | 323 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 97 | 148 | IPR011598 | GO:0046983(InterPro) | |
Tan10g0006 | 323 | SMART | finulus | 103 | 154 | IPR011598 | GO:0046983(InterPro) | |
Tan10g0006 | 323 | Gene3D | - | 88 | 164 | IPR036638 | GO:0046983(InterPro) | |
Tan10g0006 | 323 | MobiDBLite | consensus disorder prediction | 33 | 54 | - | - | |
Tan10g0006 | 323 | Pfam | Helix-loop-helix DNA-binding domain | 98 | 149 | IPR011598 | GO:0046983(InterPro) | |
Tan10g0006 | 323 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 97 | 164 | IPR036638 | GO:0046983(InterPro) | |
Tan10g0006 | 323 | MobiDBLite | consensus disorder prediction | 66 | 97 | - | - | |
Tan10g0006 | 323 | PANTHER | TRANSCRIPTION FACTOR FAMA | 42 | 265 | IPR044283 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER) | |
Tan10g0006 | 323 | MobiDBLite | consensus disorder prediction | 157 | 183 | - | - | |
Tan10g0006 | 323 | Pfam | Plant bHLH transcription factor, ACT-like domain | 201 | 246 | IPR054502 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan10g0006 | Tan-Chr10:272000 | Tan10g0526 | Tan-Chr10:4203530 | 7.70E-36 | dispersed | |
Tan10g0006 | Tan-Chr10:272000 | Tan10g0525 | Tan-Chr10:4203530 | 7.70E-36 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
28452 | PF00010 | HLH | 7.50E-08 | No_clan | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan10g0006 | - | - | - | 0.0 |