Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0024 ATGGGCAAGAAGGGAGCATCCTCGTGGTTGACTGCCGTCAAAAGGGCTTTTAGATCTCCTTCCAAAGATGAAGACGACAAGAAAAGAGAGAAGCGGAGATGGATTTTCAGGCGATCCACCGACACCCACCAAACGCCCTCTGTAGAGACGGTTCCCAGTAGGGACCATGCATCTTCAGAGGCCGCGCTTGCTGTGGCCGTGGCCACTGCCGAAGCTGCAATGGCCACTGCCCAAGCGGCTGTCCAAGTGGCTCGCCTCACCACCAGGCCATCCAATCACGCCAGAGATCACTACGCTGCCATTCTTATCCAGACTTCTTTTAGAGGATACCTGGCAAGGAGGGCTCTGCGTGCGCTCAAGGGGCTGGTTAAGTTGCAGGCTTTGGTGAGGGGTCACAACGTCAGAAAGCAGGCGAAGATGACCCTCCGATGCATGCAAGCTCTGGTCCGAGTGCAAGCCCGTGTGCTTGATCAACGGATGAGACTCTCCCACGAAGGCAGTAGAAAATCCACCTTCAGCGACACAAATAGCGTCCTTGGATCGCGTTACCTTCAAAACTTCTCCGACAGAAAATCCGTGTCTCAGTCAAGGGAGGGAAGTAGTACTGTTGCGGACGATTGGGATGAACGGCCCCACACTGTTGAAGAAGTGAAAGCCATGCTCCAACACAGAAAAGAGATTGCGATGAAGCGTGATAGAAATCTCTCCCACGTCTTTTCCCAGCAGATTTGGCGGAGAGGTCGAAGTCCGTCCATGGGCAGCGGAGATGAGCTGGAAGAAAGACCCAAATGGCTGGATCAATGGAATTCAAGGAAGCCATGGGAAAACAGAGGAAGAGCTTCGACTGATCAAAGAGATCCCATCAAAACAGTCGAAATCGACACATTCCAACCCTACTCTCAATCTCATACTGCCACCAACTTCCGAAGAATGACTCAAAATCAACAAAGAATAAATCCGCATTCTGGCAGTTCGCCACTCCACAGGACGCAACAAAGCATACCCTCTTTCCATCACTCACCGGCCACGCCCTCCCCGTCTAAAACCAGGCCTCTGCAAGTCCGGTCTGCAAGCCCTCGTTTCGTTAGGGACGACAAAAGCGAGAACACATCGCAAACACCGAGCTTGAGGTCAAACTACTACTACAGTGGGAATTTGCTTCAACAAAGTAGGACAGGGGCAAGTAGCAGTTACAGCCAAGGCAACTGTTTGCCGAATTACATGGCGGCCACGGAGTCTGCGAAGGCACGATTACGGTCACAGAGCGCGCCAAGGCAAAGGCCATCGACGCCGGAGAGGGAGAGGGGTGTTGGGTCAGCGAAAAAACGGCTGTCATTCCCAGTTCCTGATCCAATTGGGTATGGAATTTACGAGCGTAATTTGAGGAGCCCAAGCTTCAAGAGCGTGAGCGGGACGTACTTGGGGGTGGAGCAGCAATCCAACTATTCATCCTGCTGCACCGACAGCCTCGGCGGAGAAATTTCCCCGTCTTCAACCACCGATCTAAGAAGGTGGCTAAGGTGA 1524 52.89 MGKKGASSWLTAVKRAFRSPSKDEDDKKREKRRWIFRRSTDTHQTPSVETVPSRDHASSEAALAVAVATAEAAMATAQAAVQVARLTTRPSNHARDHYAAILIQTSFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRMRLSHEGSRKSTFSDTNSVLGSRYLQNFSDRKSVSQSREGSSTVADDWDERPHTVEEVKAMLQHRKEIAMKRDRNLSHVFSQQIWRRGRSPSMGSGDELEERPKWLDQWNSRKPWENRGRASTDQRDPIKTVEIDTFQPYSQSHTATNFRRMTQNQQRINPHSGSSPLHRTQQSIPSFHHSPATPSPSKTRPLQVRSASPRFVRDDKSENTSQTPSLRSNYYYSGNLLQQSRTGASSSYSQGNCLPNYMAATESAKARLRSQSAPRQRPSTPERERGVGSAKKRLSFPVPDPIGYGIYERNLRSPSFKSVSGTYLGVEQQSNYSSCCTDSLGGEISPSSTTDLRRWLR 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 570467 573365 - Tan0005244.1 Tan10g0024 764818

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0024 507 MobiDBLite consensus disorder prediction 190 210 - -
Tan10g0024 507 ProSiteProfiles IQ motif profile. 120 147 - -
Tan10g0024 507 MobiDBLite consensus disorder prediction 272 290 - -
Tan10g0024 507 Gene3D - 95 148 - -
Tan10g0024 507 MobiDBLite consensus disorder prediction 414 444 - -
Tan10g0024 507 Pfam Protein of unknown function (DUF4005) 358 456 IPR025064 -
Tan10g0024 507 PANTHER IQ-DOMAIN 5-RELATED 9 438 - -
Tan10g0024 507 SMART iq_5 118 139 IPR000048 GO:0005515(InterPro)
Tan10g0024 507 SMART iq_5 95 117 IPR000048 GO:0005515(InterPro)
Tan10g0024 507 MobiDBLite consensus disorder prediction 294 354 - -
Tan10g0024 507 ProSiteProfiles IQ motif profile. 96 124 - -
Tan10g0024 507 MobiDBLite consensus disorder prediction 1 55 - -
Tan10g0024 507 FunFam IQ-domain 11 95 146 - -
Tan10g0024 507 MobiDBLite consensus disorder prediction 40 54 - -
Tan10g0024 507 MobiDBLite consensus disorder prediction 272 380 - -
Tan10g0024 507 MobiDBLite consensus disorder prediction 484 507 - -
Tan10g0024 507 Pfam IQ calmodulin-binding motif 99 117 IPR000048 GO:0005515(InterPro)
Tan10g0024 507 Pfam IQ calmodulin-binding motif 123 139 IPR000048 GO:0005515(InterPro)
Tan10g0024 507 MobiDBLite consensus disorder prediction 17 39 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0024 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2354 Tan-Chr1:28337529 Tan10g0024 Tan-Chr10:570467 6.90E-11 dispersed
Tan10g0024 Tan-Chr10:570467 Tan11g0812 Tan-Chr11:6799965 2.60E-38 dispersed
Tan10g0024 Tan-Chr10:570467 Tan10g0025 Tan-Chr10:570467 6.90E-241 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan04g0574 . 3 175 IQD Protein Family AT3G09710 55.4 1.8e-46 184.5
Tan11g0812 . 1 479 IQD Protein Family AT3G52290 54.0 5.7e-103 372.1
Tan04g0574 . 3 176 IQD Protein Family AT2G26410 52.0 2.0e-41 167.9
Tan09g0678 . 1 411 IQD Protein Family AT3G22190 56.9 1.3e-94 344.4
Tan01g4612 . 1 438 IQD Protein Family AT2G26180 61.1 2.5e-119 426.4
Tan03g2549 . 1 279 IQD Protein Family AT2G33990 52.6 7.7e-66 248.1
Tan01g0850 . 40 223 IQD Protein Family AT2G33990 54.5 7.7e-50 194.9
Tan03g2549 . 1 254 IQD Protein Family AT3G15050 50.2 3.6e-60 229.2
Tan01g0850 . 43 216 IQD Protein Family AT3G15050 63.8 7.1e-56 214.9
Tan11g1579 . 128 477 IQD Protein Family AT5G13460 50.6 1.5e-74 277.7
Tan11g1580 . 128 477 IQD Protein Family AT5G13460 50.6 1.5e-74 277.7
Tan10g0024 . 1 507 IQD Protein Family AT4G00820 55.4 7.6e-129 458.4
Tan10g0025 . 15 434 IQD Protein Family AT4G00820 63.1 2.0e-121 433.7
Tan10g0024 . 1 507 IQD Protein Family AT1G01110 52.2 1.7e-125 447.2
Tan10g0025 . 13 434 IQD Protein Family AT1G01110 57.9 1.2e-118 424.5
Tan06g0233 . 1 395 IQD Protein Family AT3G16490 52.8 4.3e-73 272.7
Tan09g1205 . 1 395 IQD Protein Family AT3G16490 50.6 7.6e-70 261.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002938 1 3 2 3 3 1 2 1 1 1 1 1 2 2 2 2 1 3 2 2 2 2 2 2 2 1 1 1 2 3 54