Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0024 ATGGGCAAGAAGGGAGCATCCTCGTGGTTGACTGCCGTCAAAAGGGCTTTTAGATCTCCTTCCAAAGATGAAGACGACAAGAAAAGAGAGAAGCGGAGATGGATTTTCAGGCGATCCACCGACACCCACCAAACGCCCTCTGTAGAGACGGTTCCCAGTAGGGACCATGCATCTTCAGAGGCCGCGCTTGCTGTGGCCGTGGCCACTGCCGAAGCTGCAATGGCCACTGCCCAAGCGGCTGTCCAAGTGGCTCGCCTCACCACCAGGCCATCCAATCACGCCAGAGATCACTACGCTGCCATTCTTATCCAGACTTCTTTTAGAGGATACCTGGCAAGGAGGGCTCTGCGTGCGCTCAAGGGGCTGGTTAAGTTGCAGGCTTTGGTGAGGGGTCACAACGTCAGAAAGCAGGCGAAGATGACCCTCCGATGCATGCAAGCTCTGGTCCGAGTGCAAGCCCGTGTGCTTGATCAACGGATGAGACTCTCCCACGAAGGCAGTAGAAAATCCACCTTCAGCGACACAAATAGCGTCCTTGGATCGCGTTACCTTCAAAACTTCTCCGACAGAAAATCCGTGTCTCAGTCAAGGGAGGGAAGTAGTACTGTTGCGGACGATTGGGATGAACGGCCCCACACTGTTGAAGAAGTGAAAGCCATGCTCCAACACAGAAAAGAGATTGCGATGAAGCGTGATAGAAATCTCTCCCACGTCTTTTCCCAGCAGATTTGGCGGAGAGGTCGAAGTCCGTCCATGGGCAGCGGAGATGAGCTGGAAGAAAGACCCAAATGGCTGGATCAATGGAATTCAAGGAAGCCATGGGAAAACAGAGGAAGAGCTTCGACTGATCAAAGAGATCCCATCAAAACAGTCGAAATCGACACATTCCAACCCTACTCTCAATCTCATACTGCCACCAACTTCCGAAGAATGACTCAAAATCAACAAAGAATAAATCCGCATTCTGGCAGTTCGCCACTCCACAGGACGCAACAAAGCATACCCTCTTTCCATCACTCACCGGCCACGCCCTCCCCGTCTAAAACCAGGCCTCTGCAAGTCCGGTCTGCAAGCCCTCGTTTCGTTAGGGACGACAAAAGCGAGAACACATCGCAAACACCGAGCTTGAGGTCAAACTACTACTACAGTGGGAATTTGCTTCAACAAAGTAGGACAGGGGCAAGTAGCAGTTACAGCCAAGGCAACTGTTTGCCGAATTACATGGCGGCCACGGAGTCTGCGAAGGCACGATTACGGTCACAGAGCGCGCCAAGGCAAAGGCCATCGACGCCGGAGAGGGAGAGGGGTGTTGGGTCAGCGAAAAAACGGCTGTCATTCCCAGTTCCTGATCCAATTGGGTATGGAATTTACGAGCGTAATTTGAGGAGCCCAAGCTTCAAGAGCGTGAGCGGGACGTACTTGGGGGTGGAGCAGCAATCCAACTATTCATCCTGCTGCACCGACAGCCTCGGCGGAGAAATTTCCCCGTCTTCAACCACCGATCTAAGAAGGTGGCTAAGGTGA 1524 52.89 MGKKGASSWLTAVKRAFRSPSKDEDDKKREKRRWIFRRSTDTHQTPSVETVPSRDHASSEAALAVAVATAEAAMATAQAAVQVARLTTRPSNHARDHYAAILIQTSFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRMRLSHEGSRKSTFSDTNSVLGSRYLQNFSDRKSVSQSREGSSTVADDWDERPHTVEEVKAMLQHRKEIAMKRDRNLSHVFSQQIWRRGRSPSMGSGDELEERPKWLDQWNSRKPWENRGRASTDQRDPIKTVEIDTFQPYSQSHTATNFRRMTQNQQRINPHSGSSPLHRTQQSIPSFHHSPATPSPSKTRPLQVRSASPRFVRDDKSENTSQTPSLRSNYYYSGNLLQQSRTGASSSYSQGNCLPNYMAATESAKARLRSQSAPRQRPSTPERERGVGSAKKRLSFPVPDPIGYGIYERNLRSPSFKSVSGTYLGVEQQSNYSSCCTDSLGGEISPSSTTDLRRWLR 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 570467 573365 - Tan0005244.1 Tan10g0024 764818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0024 507 MobiDBLite consensus disorder prediction 190 210 - -
Tan10g0024 507 ProSiteProfiles IQ motif profile. 120 147 - -
Tan10g0024 507 MobiDBLite consensus disorder prediction 272 290 - -
Tan10g0024 507 Gene3D - 95 148 - -
Tan10g0024 507 MobiDBLite consensus disorder prediction 414 444 - -
Tan10g0024 507 Pfam Protein of unknown function (DUF4005) 358 456 IPR025064 -
Tan10g0024 507 PANTHER IQ-DOMAIN 5-RELATED 9 438 - -
Tan10g0024 507 SMART iq_5 118 139 IPR000048 GO:0005515(InterPro)
Tan10g0024 507 SMART iq_5 95 117 IPR000048 GO:0005515(InterPro)
Tan10g0024 507 MobiDBLite consensus disorder prediction 294 354 - -
Tan10g0024 507 ProSiteProfiles IQ motif profile. 96 124 - -
Tan10g0024 507 MobiDBLite consensus disorder prediction 1 55 - -
Tan10g0024 507 FunFam IQ-domain 11 95 146 - -
Tan10g0024 507 MobiDBLite consensus disorder prediction 40 54 - -
Tan10g0024 507 MobiDBLite consensus disorder prediction 272 380 - -
Tan10g0024 507 MobiDBLite consensus disorder prediction 484 507 - -
Tan10g0024 507 Pfam IQ calmodulin-binding motif 99 117 IPR000048 GO:0005515(InterPro)
Tan10g0024 507 Pfam IQ calmodulin-binding motif 123 139 IPR000048 GO:0005515(InterPro)
Tan10g0024 507 MobiDBLite consensus disorder prediction 17 39 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2354 Tan-Chr1:28337529 Tan10g0024 Tan-Chr10:570467 6.90E-11 dispersed
Tan10g0024 Tan-Chr10:570467 Tan11g0812 Tan-Chr11:6799965 2.60E-38 dispersed
Tan10g0024 Tan-Chr10:570467 Tan10g0025 Tan-Chr10:570467 6.90E-241 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0024 - - - 0.0