Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0025 ATGGCCACTGCCCAAGCGGCTGTCCAAGTGGCTCGCCTCACCACCAGGCCATCCAATCACGCCAGAGATCACTACGCTGCCATTCTTATCCAGACTTCTTTTAGAGGATACCTGGCAAGGAGGGCTCTGCGTGCGCTCAAGGGGCTGGTTAAGTTGCAGGCTTTGGTGAGGGGTCACAACGTCAGAAAGCAGGCGAAGATGACCCTCCGATGCATGCAAGCTCTGGTCCGAGTGCAAGCCCGTGTGCTTGATCAACGGATGAGACTCTCCCACGAAGGCAGTAGAAAATCCACCTTCAGCGACACAAATAGCGTCCTTGGATCGCGTTACCTTCAAAACTTCTCCGACAGAAAATCCGTGTCTCAGTCAAGGGAGGGAAGTAGTACTGTTGCGGACGATTGGGATGAACGGCCCCACACTGTTGAAGAAGTGAAAGCCATGCTCCAACACAGAAAAGAGATTGCGATGAAGCGTGATAGAAATCTCTCCCACGTCTTTTCCCAGCAGATTTGGCGGAGAGGTCGAAGTCCGTCCATGGGCAGCGGAGATGAGCTGGAAGAAAGACCCAAATGGCTGGATCAATGGAATTCAAGGAAGCCATGGGAAAACAGAGGAAGAGCTTCGACTGATCAAAGAGATCCCATCAAAACAGTCGAAATCGACACATTCCAACCCTACTCTCAATCTCATACTGCCACCAACTTCCGAAGAATGACTCAAAATCAACAAAGAATAAATCCGCATTCTGGCAGTTCGCCACTCCACAGGACGCAACAAAGCATACCCTCTTTCCATCACTCACCGGCCACGCCCTCCCCGTCTAAAACCAGGCCTCTGCAAGTCCGGTCTGCAAGCCCTCGTTTCGTTAGGGACGACAAAAGCGAGAACACATCGCAAACACCGAGCTTGAGGTCAAACTACTACTACAGTGGGAATTTGCTTCAACAAAGTAGGACAGGGGCAAGTAGCAGTTACAGCCAAGGCAACTGTTTGCCGAATTACATGGCGGCCACGGAGTCTGCGAAGGCACGATTACGGTCACAGAGCGCGCCAAGGCAAAGGCCATCGACGCCGGAGAGGGAGAGGGGTGTTGGGTCAGCGAAAAAACGGCTGTCATTCCCAGTTCCTGATCCAATTGGGTATGGAATTTACGAGCGTAATTTGAGGAGCCCAAGCTTCAAGAGCGTGAGCGGGACGTACTTGGGGGTGGAGCAGCAATCCAACTATTCATCCTGCTGCACCGACAGCCTCGGCGGAGAAATTTCCCCGTCTTCAACCACCGATCTAAGAAGGTGGCTAAGGTGA 1305 52.49 MATAQAAVQVARLTTRPSNHARDHYAAILIQTSFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRMRLSHEGSRKSTFSDTNSVLGSRYLQNFSDRKSVSQSREGSSTVADDWDERPHTVEEVKAMLQHRKEIAMKRDRNLSHVFSQQIWRRGRSPSMGSGDELEERPKWLDQWNSRKPWENRGRASTDQRDPIKTVEIDTFQPYSQSHTATNFRRMTQNQQRINPHSGSSPLHRTQQSIPSFHHSPATPSPSKTRPLQVRSASPRFVRDDKSENTSQTPSLRSNYYYSGNLLQQSRTGASSSYSQGNCLPNYMAATESAKARLRSQSAPRQRPSTPERERGVGSAKKRLSFPVPDPIGYGIYERNLRSPSFKSVSGTYLGVEQQSNYSSCCTDSLGGEISPSSTTDLRRWLR 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 570467 573365 - Tan0005244.2 Tan10g0025 764819

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0025 434 MobiDBLite consensus disorder prediction 199 217 - -
Tan10g0025 434 ProSiteProfiles IQ motif profile. 47 74 - -
Tan10g0025 434 PANTHER IQ-DOMAIN 5-RELATED 5 365 - -
Tan10g0025 434 FunFam IQ-domain 11 22 73 - -
Tan10g0025 434 ProSiteProfiles IQ motif profile. 23 51 - -
Tan10g0025 434 Pfam IQ calmodulin-binding motif 50 66 IPR000048 GO:0005515(InterPro)
Tan10g0025 434 Pfam IQ calmodulin-binding motif 26 44 IPR000048 GO:0005515(InterPro)
Tan10g0025 434 MobiDBLite consensus disorder prediction 341 371 - -
Tan10g0025 434 SMART iq_5 22 44 IPR000048 GO:0005515(InterPro)
Tan10g0025 434 SMART iq_5 45 66 IPR000048 GO:0005515(InterPro)
Tan10g0025 434 MobiDBLite consensus disorder prediction 412 434 - -
Tan10g0025 434 MobiDBLite consensus disorder prediction 221 281 - -
Tan10g0025 434 MobiDBLite consensus disorder prediction 199 307 - -
Tan10g0025 434 Gene3D - 21 75 - -
Tan10g0025 434 Pfam Protein of unknown function (DUF4005) 285 383 IPR025064 -
Tan10g0025 434 MobiDBLite consensus disorder prediction 117 137 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0025 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g0444 Tan-Chr8:4247969 Tan10g0025 Tan-Chr10:570467 3.50E-11 dispersed
Tan10g0025 Tan-Chr10:570467 Tan11g0812 Tan-Chr11:6799965 4.00E-35 dispersed
Tan10g0024 Tan-Chr10:570467 Tan10g0025 Tan-Chr10:570467 6.90E-241 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan04g0574 . 3 175 IQD Protein Family AT3G09710 55.4 1.8e-46 184.5
Tan11g0812 . 1 479 IQD Protein Family AT3G52290 54.0 5.7e-103 372.1
Tan04g0574 . 3 176 IQD Protein Family AT2G26410 52.0 2.0e-41 167.9
Tan09g0678 . 1 411 IQD Protein Family AT3G22190 56.9 1.3e-94 344.4
Tan01g4612 . 1 438 IQD Protein Family AT2G26180 61.1 2.5e-119 426.4
Tan03g2549 . 1 279 IQD Protein Family AT2G33990 52.6 7.7e-66 248.1
Tan01g0850 . 40 223 IQD Protein Family AT2G33990 54.5 7.7e-50 194.9
Tan03g2549 . 1 254 IQD Protein Family AT3G15050 50.2 3.6e-60 229.2
Tan01g0850 . 43 216 IQD Protein Family AT3G15050 63.8 7.1e-56 214.9
Tan11g1579 . 128 477 IQD Protein Family AT5G13460 50.6 1.5e-74 277.7
Tan11g1580 . 128 477 IQD Protein Family AT5G13460 50.6 1.5e-74 277.7
Tan10g0024 . 1 507 IQD Protein Family AT4G00820 55.4 7.6e-129 458.4
Tan10g0025 . 15 434 IQD Protein Family AT4G00820 63.1 2.0e-121 433.7
Tan10g0024 . 1 507 IQD Protein Family AT1G01110 52.2 1.7e-125 447.2
Tan10g0025 . 13 434 IQD Protein Family AT1G01110 57.9 1.2e-118 424.5
Tan06g0233 . 1 395 IQD Protein Family AT3G16490 52.8 4.3e-73 272.7
Tan09g1205 . 1 395 IQD Protein Family AT3G16490 50.6 7.6e-70 261.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002938 1 3 2 3 3 1 2 1 1 1 1 1 2 2 2 2 1 3 2 2 2 2 2 2 2 1 1 1 2 3 54