Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0025 ATGGCCACTGCCCAAGCGGCTGTCCAAGTGGCTCGCCTCACCACCAGGCCATCCAATCACGCCAGAGATCACTACGCTGCCATTCTTATCCAGACTTCTTTTAGAGGATACCTGGCAAGGAGGGCTCTGCGTGCGCTCAAGGGGCTGGTTAAGTTGCAGGCTTTGGTGAGGGGTCACAACGTCAGAAAGCAGGCGAAGATGACCCTCCGATGCATGCAAGCTCTGGTCCGAGTGCAAGCCCGTGTGCTTGATCAACGGATGAGACTCTCCCACGAAGGCAGTAGAAAATCCACCTTCAGCGACACAAATAGCGTCCTTGGATCGCGTTACCTTCAAAACTTCTCCGACAGAAAATCCGTGTCTCAGTCAAGGGAGGGAAGTAGTACTGTTGCGGACGATTGGGATGAACGGCCCCACACTGTTGAAGAAGTGAAAGCCATGCTCCAACACAGAAAAGAGATTGCGATGAAGCGTGATAGAAATCTCTCCCACGTCTTTTCCCAGCAGATTTGGCGGAGAGGTCGAAGTCCGTCCATGGGCAGCGGAGATGAGCTGGAAGAAAGACCCAAATGGCTGGATCAATGGAATTCAAGGAAGCCATGGGAAAACAGAGGAAGAGCTTCGACTGATCAAAGAGATCCCATCAAAACAGTCGAAATCGACACATTCCAACCCTACTCTCAATCTCATACTGCCACCAACTTCCGAAGAATGACTCAAAATCAACAAAGAATAAATCCGCATTCTGGCAGTTCGCCACTCCACAGGACGCAACAAAGCATACCCTCTTTCCATCACTCACCGGCCACGCCCTCCCCGTCTAAAACCAGGCCTCTGCAAGTCCGGTCTGCAAGCCCTCGTTTCGTTAGGGACGACAAAAGCGAGAACACATCGCAAACACCGAGCTTGAGGTCAAACTACTACTACAGTGGGAATTTGCTTCAACAAAGTAGGACAGGGGCAAGTAGCAGTTACAGCCAAGGCAACTGTTTGCCGAATTACATGGCGGCCACGGAGTCTGCGAAGGCACGATTACGGTCACAGAGCGCGCCAAGGCAAAGGCCATCGACGCCGGAGAGGGAGAGGGGTGTTGGGTCAGCGAAAAAACGGCTGTCATTCCCAGTTCCTGATCCAATTGGGTATGGAATTTACGAGCGTAATTTGAGGAGCCCAAGCTTCAAGAGCGTGAGCGGGACGTACTTGGGGGTGGAGCAGCAATCCAACTATTCATCCTGCTGCACCGACAGCCTCGGCGGAGAAATTTCCCCGTCTTCAACCACCGATCTAAGAAGGTGGCTAAGGTGA 1305 52.49 MATAQAAVQVARLTTRPSNHARDHYAAILIQTSFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRMRLSHEGSRKSTFSDTNSVLGSRYLQNFSDRKSVSQSREGSSTVADDWDERPHTVEEVKAMLQHRKEIAMKRDRNLSHVFSQQIWRRGRSPSMGSGDELEERPKWLDQWNSRKPWENRGRASTDQRDPIKTVEIDTFQPYSQSHTATNFRRMTQNQQRINPHSGSSPLHRTQQSIPSFHHSPATPSPSKTRPLQVRSASPRFVRDDKSENTSQTPSLRSNYYYSGNLLQQSRTGASSSYSQGNCLPNYMAATESAKARLRSQSAPRQRPSTPERERGVGSAKKRLSFPVPDPIGYGIYERNLRSPSFKSVSGTYLGVEQQSNYSSCCTDSLGGEISPSSTTDLRRWLR 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 570467 573365 - Tan0005244.2 Tan10g0025 764819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0025 434 MobiDBLite consensus disorder prediction 199 217 - -
Tan10g0025 434 ProSiteProfiles IQ motif profile. 47 74 - -
Tan10g0025 434 PANTHER IQ-DOMAIN 5-RELATED 5 365 - -
Tan10g0025 434 FunFam IQ-domain 11 22 73 - -
Tan10g0025 434 ProSiteProfiles IQ motif profile. 23 51 - -
Tan10g0025 434 Pfam IQ calmodulin-binding motif 50 66 IPR000048 GO:0005515(InterPro)
Tan10g0025 434 Pfam IQ calmodulin-binding motif 26 44 IPR000048 GO:0005515(InterPro)
Tan10g0025 434 MobiDBLite consensus disorder prediction 341 371 - -
Tan10g0025 434 SMART iq_5 22 44 IPR000048 GO:0005515(InterPro)
Tan10g0025 434 SMART iq_5 45 66 IPR000048 GO:0005515(InterPro)
Tan10g0025 434 MobiDBLite consensus disorder prediction 412 434 - -
Tan10g0025 434 MobiDBLite consensus disorder prediction 221 281 - -
Tan10g0025 434 MobiDBLite consensus disorder prediction 199 307 - -
Tan10g0025 434 Gene3D - 21 75 - -
Tan10g0025 434 Pfam Protein of unknown function (DUF4005) 285 383 IPR025064 -
Tan10g0025 434 MobiDBLite consensus disorder prediction 117 137 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g0444 Tan-Chr8:4247969 Tan10g0025 Tan-Chr10:570467 3.50E-11 dispersed
Tan10g0025 Tan-Chr10:570467 Tan11g0812 Tan-Chr11:6799965 4.00E-35 dispersed
Tan10g0024 Tan-Chr10:570467 Tan10g0025 Tan-Chr10:570467 6.90E-241 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0025 - - - 0.0