Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0038 ATGGGACATTTTCACCATTATTCCCTTTTCTTTGCTGCCCTTCTTTCACTTTCACTTTCTAGTACCCCTTGCTTTTGCTTCCATCCCAAATCCTTTAATGTGTCTAAGTATCAATCCTATGATTCCGATTGGTCCCCGGCTGTCGCCACCTGGTACGGTGGCCCTAACGGAGCCGGGAGCGATGGAGGTTCATGTGGGTATGGAAAAGCGGTGGAGCAACCGCCATTTTCGTCGTTAATTGCGGCGGGAGGTCCTTCCTTGTATAATTCCGGCAAAGCCTGTGGAGCTTGTTATCAGGTGAAGTGCACGGGACAAGCCGCATGCTCGGGAAATCCGGTGACAGTGGTTATAACGGATAGTTGTCCCGGCGGTTCATGTGCTTCCGACGCCGTCCACTTCGACCTCAGTGGCACTGCTTTTGGTGCTATGGCTGCAACTGGTCGTGCCGATCAACTCCGCAATCTTGGCGTTTTGCAGATTCAACATAAAAGGGTGGAATGCAATTATCCAGGAACATCTATCAACTTCATCGTGGACTCGGGGTCGAACCCGAACTATTTCGCAGCTCTGATCGAATACGAAGATGGAGATGGAGATCTTGGTTCAGTAGAGCTGAAACAGGGGGCGCTGGACTCAAACTCATGGATTCCAATGAAGCAGTCATGGGGTGCAGTTTGGAAGCTGGACTCTGGCTCCGCCCTTCAAGCTCCCTTCTCCCTCAGGCTCACTGCCCTCGACTCCGGCAAGACCGTGGTCGCTAACCACGTAATTCCGGCTGGGTGGCAACCGGGGCAGACTTATAGATCAGTGGTCAACTTCGATACTTAA 828 51.93 MGHFHHYSLFFAALLSLSLSSTPCFCFHPKSFNVSKYQSYDSDWSPAVATWYGGPNGAGSDGGSCGYGKAVEQPPFSSLIAAGGPSLYNSGKACGACYQVKCTGQAACSGNPVTVVITDSCPGGSCASDAVHFDLSGTAFGAMAATGRADQLRNLGVLQIQHKRVECNYPGTSINFIVDSGSNPNYFAALIEYEDGDGDLGSVELKQGALDSNSWIPMKQSWGAVWKLDSGSALQAPFSLRLTALDSGKTVVANHVIPAGWQPGQTYRSVVNFDT 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 747853 749442 - Tan0008830.1 Tan10g0038 764832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0038 275 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 185 269 IPR007117 -
Tan10g0038 275 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 62 172 IPR007112 -
Tan10g0038 275 PANTHER EXPANSIN-B3 16 273 - -
Tan10g0038 275 CDD DPBB_EXPB_N 44 167 - -
Tan10g0038 275 Gene3D - 169 273 IPR036749 -
Tan10g0038 275 SMART dpbb_1 80 162 IPR007112 -
Tan10g0038 275 SUPERFAMILY Barwin-like endoglucanases 43 192 IPR036908 -
Tan10g0038 275 Gene3D - 30 168 IPR036908 -
Tan10g0038 275 PRINTS Expansin/Lol pI family signature 255 269 IPR007118 GO:0005576(InterPro)
Tan10g0038 275 PRINTS Expansin/Lol pI family signature 215 229 IPR007118 GO:0005576(InterPro)
Tan10g0038 275 PRINTS Expansin/Lol pI family signature 155 171 IPR007118 GO:0005576(InterPro)
Tan10g0038 275 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576(InterPro)
Tan10g0038 275 PRINTS Expansin/Lol pI family signature 84 102 IPR007118 GO:0005576(InterPro)
Tan10g0038 275 PRINTS Expansin/Lol pI family signature 43 58 IPR007118 GO:0005576(InterPro)
Tan10g0038 275 Pfam Lytic transglycolase 81 159 IPR009009 -
Tan10g0038 275 PRINTS Major pollen allergen Lol pI signature 122 137 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Tan10g0038 275 PRINTS Major pollen allergen Lol pI signature 224 241 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Tan10g0038 275 PRINTS Major pollen allergen Lol pI signature 82 93 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Tan10g0038 275 PRINTS Major pollen allergen Lol pI signature 144 159 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Tan10g0038 275 PRINTS Major pollen allergen Lol pI signature 192 207 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Tan10g0038 275 PRINTS Major pollen allergen Lol pI signature 176 191 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Tan10g0038 275 Pfam Expansin C-terminal domain 174 258 IPR007117 -
Tan10g0038 275 SUPERFAMILY PHL pollen allergen 173 269 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0231 Tan-Chr2:2035752 Tan10g0038 Tan-Chr10:747853 5.70E-64 dispersed
Tan09g0708 Tan-Chr9:56737329 Tan10g0038 Tan-Chr10:747853 5.60E-24 dispersed
Tan09g0709 Tan-Chr9:56770231 Tan10g0038 Tan-Chr10:747853 6.60E-25 dispersed
Tan10g0038 Tan-Chr10:747853 Tan05g0779 Tan-Chr5:5689316 1.20E-64 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0038 - - - 0.0