Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0052 ATGGAACCATTTTTCAATTACATTGAAGCATCTGATACTAAAGCAACCACCTTTTGCAGCTCTTCCTCTATCACAAGCCATGAAAATGGAGAAATTTCAGAGAAGAGAAAACAGAGGAGCTGTGAAGAAGATAAGAGCCACCATATGTTCAGAGGAGTTCGAAAACGAAATTGGGGTAAATGGGTTTCTGAGATTCGTGAGCCAAGGAAGAAGACGAGGATTTGGCTTGGAACTTACCCAACGCCGGAAATGGCAGCCCGAGCCCACGACGTCGCGGCGCTGGCCATAAAGGGTCGCTCTGCTTTTCTCAATTTCCCTGAATTGGCTCAATCCCTTCCTCGCCCGCTCTCCAACTCCCATAAGGACATTCAGGCCGCCGCAGCGCAGGCGGCGGCCGCCACATTTTCAGTCGGAAACAACTGTGAGATTGGAGGAGGGGAAGCGGCGGAGAACAGGGAGCCTCTGTTTTCTGGTAGCGACGGCGGTGAGAGAACAGAGGACTCCACAGACTCCCCGTCGACGGCCGCCGGTGATGAGACATTGTTCGATTTGCCTGATCTGTTCGTCGGAAGTTCTGATTTGAAAGATGGGTTTCTTTATCATTCTTCGTTATGGCAGTTTTGTGCGGCGGCCGATCATTCTGGTTTACGGCTGGAAGAGCCTTCGTGTTGGGAGCTCATTTAA 684 50.88 MEPFFNYIEASDTKATTFCSSSSITSHENGEISEKRKQRSCEEDKSHHMFRGVRKRNWGKWVSEIREPRKKTRIWLGTYPTPEMAARAHDVAALAIKGRSAFLNFPELAQSLPRPLSNSHKDIQAAAAQAAAATFSVGNNCEIGGGEAAENREPLFSGSDGGERTEDSTDSPSTAAGDETLFDLPDLFVGSSDLKDGFLYHSSLWQFCAAADHSGLRLEEPSCWELI 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 874216 875864 - Tan0004883.1 Tan10g0052 764846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0052 227 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 34 192 IPR051032 -
Tan10g0052 227 MobiDBLite consensus disorder prediction 21 47 - -
Tan10g0052 227 SUPERFAMILY DNA-binding domain 49 107 IPR016177 GO:0003677(InterPro)
Tan10g0052 227 FunFam Ethylene-responsive transcription factor 2 48 107 - -
Tan10g0052 227 Gene3D AP2/ERF domain 49 107 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan10g0052 227 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan10g0052 227 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan10g0052 227 Pfam AP2 domain 50 98 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan10g0052 227 CDD AP2 50 108 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan10g0052 227 MobiDBLite consensus disorder prediction 29 47 - -
Tan10g0052 227 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Tan10g0052 227 MobiDBLite consensus disorder prediction 144 178 - -
Tan10g0052 227 SMART rav1_2 49 112 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g1802 Tan-Chr6:41488456 Tan10g0052 Tan-Chr10:874216 4.40E-37 dispersed
Tan08g0138 Tan-Chr8:1200833 Tan10g0052 Tan-Chr10:874216 6.60E-30 dispersed
Tan08g1762 Tan-Chr8:69584764 Tan10g0052 Tan-Chr10:874216 4.90E-20 dispersed
Tan08g1763 Tan-Chr8:69611163 Tan10g0052 Tan-Chr10:874216 1.20E-25 dispersed
Tan09g1224 Tan-Chr9:64693612 Tan10g0052 Tan-Chr10:874216 2.60E-34 dispersed
Tan10g0052 Tan-Chr10:874216 Tan10g1940 Tan-Chr10:62178984 2.10E-27 dispersed
Tan10g0052 Tan-Chr10:874216 Tan01g3934 Tan-Chr1:104234861 2.50E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28461 PF00847 AP2 4.80E-14 CL0081 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0052 - - - 0.0