Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0059 ATGGGCGGGAGAGATGACGAGTTAGGGCTCAGTTTGAGTTTAGGGTTTCGAGTTACGACTCAGCCTTCTTTTCAGCCGAGTCACATGCAGAGGCCTTCCAACTCCATGCATAATCACCTCCGCAAGAGCTCTTGGAATGAACTCTTTCAATTTTCTGATCGAAATGTCGATTCGAGGTCGTTTCTTAGGGGAATCGACGTGAATCGGCTTCCGACGGCGGTGGATGGCGAGGAAGAGATTTGCGTTTCGTCTCCGAATAGTACGATTTCTAGTATCAATGGAAAAAGGTGCGAGAGAGAGGCCGTCGGAGACGAGGCTGAGGCTGAGGTGGAGGCGGAGGCCGAGAGAGCCTCGTGCTCGCGAGGGAGCGACGACGAAGACGGCGGCGGAGGCGACGGCGACGGCGACGCCTCGAGAAAGAAGCTTAGGCTATCGAAGGAACAGTCGATGGTTCTTGAGGAGACGTTCAAAGAGCACCACACGCTCAATCCAAAGCAAAAGCTGGCTCTTGCAAAGCAGCTGAATCTGAGACCAAGACAAGTGGAGGTGTGGTTTCAAAACAGAAGGGCAAGGACCAAGCTGAAGCAGACAGAAGTGGATTGTGAGTACTTGAAGAGGTGCTGTGAGAATCTAACAGAAGAAAACAGAAGGCTACAGAAGGAGGTGCAAGAGTTGAGAGCACTCAAGCTTTCTCCACAGCTATATATGCACATGAATCCTCCTACCACTCTCACTATGTGCCCTCAGTGTGAGCGTGTGGCCGTTTCCTCGTCTTCTTCGACCTCAGCTGTTCCGACCCGCCATCCATCAGCGGCTGGTGTGCAGCGTCCCTCGATGGCCATTAACCCGTGGGCAGTGCTGCCGATCCAACGTTGA 876 53.2 MGGRDDELGLSLSLGFRVTTQPSFQPSHMQRPSNSMHNHLRKSSWNELFQFSDRNVDSRSFLRGIDVNRLPTAVDGEEEICVSSPNSTISSINGKRCEREAVGDEAEAEVEAEAERASCSRGSDDEDGGGGDGDGDASRKKLRLSKEQSMVLEETFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPQCERVAVSSSSSTSAVPTRHPSAAGVQRPSMAINPWAVLPIQR 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 933680 935935 + Tan0004482.1 Tan10g0059 764853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0059 291 ProSiteProfiles 'Homeobox' domain profile. 135 195 IPR001356 GO:0003677(InterPro)
Tan10g0059 291 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 7 264 IPR050762 -
Tan10g0059 291 Gene3D - 131 200 - -
Tan10g0059 291 SMART halz 195 238 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan10g0059 291 MobiDBLite consensus disorder prediction 112 140 - -
Tan10g0059 291 MobiDBLite consensus disorder prediction 100 140 - -
Tan10g0059 291 Pfam Homeodomain 139 193 IPR001356 GO:0003677(InterPro)
Tan10g0059 291 SUPERFAMILY Homeodomain-like 123 196 IPR009057 -
Tan10g0059 291 CDD homeodomain 139 196 IPR001356 GO:0003677(InterPro)
Tan10g0059 291 Pfam Homeobox associated leucine zipper 195 229 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Tan10g0059 291 Coils Coil 201 231 - -
Tan10g0059 291 ProSitePatterns 'Homeobox' domain signature. 170 193 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Tan10g0059 291 Pfam HD-ZIP protein N terminus 1 100 IPR006712 GO:0005634(InterPro)
Tan10g0059 291 SMART HOX_1 137 199 IPR001356 GO:0003677(InterPro)
Tan10g0059 291 FunFam Homeobox-leucine zipper protein 18 124 200 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g2068 Tan-Chr1:23654003 Tan10g0059 Tan-Chr10:933680 8.80E-73 dispersed
Tan04g2471 Tan-Chr4:83485416 Tan10g0059 Tan-Chr10:933680 5.10E-44 dispersed
Tan08g1519 Tan-Chr8:62923202 Tan10g0059 Tan-Chr10:933680 3.90E-20 dispersed
Tan09g1759 Tan-Chr9:69123874 Tan10g0059 Tan-Chr10:933680 8.10E-40 dispersed
Tan10g0059 Tan-Chr10:933680 Tan11g1807 Tan-Chr11:20164424 7.70E-35 dispersed
Tan10g0059 Tan-Chr10:933680 Tan06g0528 Tan-Chr6:4040918 2.30E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28462 PF04618 HD-ZIP_N 6.40E-28 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0059 K09338 - csv:101222132 418.313