Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0068 ATGAACGTGAAAACTCCGGCGACCAGGACTCGTGTTGGCAAGTACGAGCTCGGTAAAACCCTCGGCGAGGGCACTTTTGCTAAGGTCAAGTTTGCCAAGAACATTGAGAATGGTGATTATGTCGCTATCAAGATTCTTGATCGTGAACAAGTTCTTCGACACAAGATGGTCGAACAGATAAAAAGAGAGATATCTACTCTGAAAGTGATCAAGCATCCGAATGTCGTTCAGATTTATGAGGTTATGGCAAGCAAATCGAAAATCTACATTGTTCTTGAGTTTGTGGATGGAGGCGAGCTCTTTGACAAAATAGCTGCAAAGGGAAGGCTTAAAGAGGACGAGGCAAGGAAATATTTCCATCAAATTATTAATGCTGTAGATTACTGCCATAGTAGAGGCGTGTACCATCGAGATTTGAAGCCTGAAAATCTTCTTCTGGACTCACATGGTGTTCTTAAAGTATCAGATTTTGGATTAAGTGCATTTTCGCAGCAAGTTCGAGGGGATGGTCTTCTTCACACTGCCTGTGGGACTCCAAACTATGTAGCGCCCGAGGTCTTCCATGATAAAGGTTATGATGGTACATCATCAGATATTTGGTCATGCGGGGTCATTCTCTTCGTTCTTATGGCAGGCTTCTTGCCTTTCGACGAAGCAAATCTAATGTGTTTGTATAGAAAGATTTCCAACGCTGATTTCTGCTTTCCATCATGGTTCTCAAATGGTGCTCGAAAACTAATTCGTCGTATTCTTGATCCAAACCCTCTTACTAGAATAACGATAGCTGAAATTCAAGAAGATGAATGGTTCAAGAAGGGCTACACACCCGCTCACTTTGAAGTGGAAGAGGATATACCTCTCGATGATGTCGATGCCGCTTTTAGCAGCTCGAGGGAACATCTTGTGACTGAAAAGAAAGAGAAGCCAGTGTCCATGAATGCTTTTGAGCTTATCTCTAGGTCACCAGGTTTCAGTCTTGAAAATCTATTTGAGAAGCAGAAGGCTGTTGCAAAGAGTGAAACCCGGTTTACTTCGCAAAGCCCTGCAAATGAGATCATGTCGAAGATCGAAGAAACTGCAAAACCTATGGGTTTCAATGTACGAAAACGGGACTACAAGATGAAGCTGCAAGGTGACAAGACTGGGAGGAAAGGACACCTCTCCATAGCTACTGAGGTGTTTGAGGTGGCTCCTTCGTTGCATATGGTGGAGCTTAGGAAAACCGGTGGCGATACGCTCGAGTTTCACAAGTTCTACAAAAGTTTCTCTTCAGGATTAAAAGACATAATGTGGAGAACTGATGAAAATACTGTAGAAGGGAGCTAA 1326 43.14 MNVKTPATRTRVGKYELGKTLGEGTFAKVKFAKNIENGDYVAIKILDREQVLRHKMVEQIKREISTLKVIKHPNVVQIYEVMASKSKIYIVLEFVDGGELFDKIAAKGRLKEDEARKYFHQIINAVDYCHSRGVYHRDLKPENLLLDSHGVLKVSDFGLSAFSQQVRGDGLLHTACGTPNYVAPEVFHDKGYDGTSSDIWSCGVILFVLMAGFLPFDEANLMCLYRKISNADFCFPSWFSNGARKLIRRILDPNPLTRITIAEIQEDEWFKKGYTPAHFEVEEDIPLDDVDAAFSSSREHLVTEKKEKPVSMNAFELISRSPGFSLENLFEKQKAVAKSETRFTSQSPANEIMSKIEETAKPMGFNVRKRDYKMKLQGDKTGRKGHLSIATEVFEVAPSLHMVELRKTGGDTLEFHKFYKSFSSGLKDIMWRTDENTVEGS 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1022351 1028061 - Tan0000347.1 Tan10g0068 764862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0068 441 SMART serkin_6 15 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan10g0068 441 FunFam Non-specific serine/threonine protein kinase 306 432 - -
Tan10g0068 441 ProSiteProfiles Protein kinase domain profile. 15 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan10g0068 441 CDD STKc_SnRK3 14 269 - -
Tan10g0068 441 Pfam Protein kinase domain 15 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan10g0068 441 CDD CIPK_C 313 428 - -
Tan10g0068 441 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524(InterPro)
Tan10g0068 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan10g0068 441 Gene3D Phosphorylase Kinase; domain 1 4 94 - -
Tan10g0068 441 FunFam Non-specific serine/threonine protein kinase 6 94 - -
Tan10g0068 441 Pfam NAF domain 309 369 IPR004041 GO:0007165(InterPro)
Tan10g0068 441 SUPERFAMILY Protein kinase-like (PK-like) 12 311 IPR011009 -
Tan10g0068 441 Gene3D Kinase associated domain 1, KA1 306 432 - -
Tan10g0068 441 ProSiteProfiles NAF domain profile. 307 331 IPR018451 GO:0007165(InterPro)
Tan10g0068 441 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 9 416 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Tan10g0068 441 Gene3D Transferase(Phosphotransferase) domain 1 95 276 - -
Tan10g0068 441 FunFam Non-specific serine/threonine protein kinase 8 310 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2727 Tan-Chr3:80210878 Tan10g0068 Tan-Chr10:1022351 6.10E-180 dispersed
Tan05g2669 Tan-Chr5:78077264 Tan10g0068 Tan-Chr10:1022351 2.70E-149 dispersed
Tan07g0620 Tan-Chr7:9675988 Tan10g0068 Tan-Chr10:1022351 6.00E-172 dispersed
Tan07g0621 Tan-Chr7:9677975 Tan10g0068 Tan-Chr10:1022351 6.90E-134 dispersed
Tan08g0370 Tan-Chr8:3345695 Tan10g0068 Tan-Chr10:1022351 2.60E-127 dispersed
Tan09g1415 Tan-Chr9:66275846 Tan10g0068 Tan-Chr10:1022351 2.70E-140 dispersed
Tan09g1553 Tan-Chr9:67372585 Tan10g0068 Tan-Chr10:1022351 3.10E-125 dispersed
Tan10g0068 Tan-Chr10:1022351 Tan10g1130 Tan-Chr10:10956116 1.50E-114 dispersed
Tan10g0068 Tan-Chr10:1022351 Tan05g2668 Tan-Chr5:78077264 1.80E-181 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68105 PF00069 Pkinase 3.10E-72 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0068 - - - 0.0