Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0111 ATGAAGATTGAAGATGGGTTGAGGAGTGTGGGTGGGAAGGATGAAGATAAGACTGTGGTTGCTGCTGTTTTGGGCACTCGGGCTTTTAATTACTTGATGTCTTGCTCTGTTTCGAATGAGAATCTGTTTATGGCTGTGAGGAATGACGAGAATTTGCAGAACAAGCTCTCGGATCTGGTGGAGAGGCCCAACGCTTCTAATTTTCGCTGGAACTATGCAATTTTCTGGCAACTTTCTCATTCAAAATCTGGTGAATGGGTTTTGGGATGGGGAGATGGATCGTGTAGAGATCCTAGGGATGGAGGAGAGGGAACAGAAGCTACACAGATTTTTAGTCTTGGCCTTGAAGATGAGAGCCAACAAAGGATGAAGAAAAGAGCACTGCAGAAGCTTCACACACTGTTTGGTGGTTCTGATGAGGATAATTATGCTCTTGGATTGGACAGAGTTACTGATACTGAAATGTTTTTTCTTGCTTCCATGTATTTTTCCTTCCCTCGTGGAGAAGGGGGCCCTGGCAAGTGTTTGGCTTCTGGGAAACATATCTGGCATTTGGATGTACTCAATTCACCTGCTGAGTATTGTGTGAGATCCTATCTGGCCAAGTCTGCAGGAATTCGGACCGTCGTTTTGGTGCCGACTGATGTTGGAGTAGTTGAATTGGGTTCTGTGAGATCCGTGAGTGAGAGCTTAGAGTTAGTGCAGTTGATTAGGTCGATGTTTTCATCTCAACATTCACTTGATAGAGTGAGGACGTCGGCTGCGATGTCGATGATCGCCGAAAGGAAGGATGAAAACACCCCATTTCCGAGTTTGGGGATTGCAGAAAGAGGAGATGGAGGGGGCGTTCCTAAGGTTTTTGGGCAGAGTTTGAACTCGGGGAACATGGGTCGGTCTCATTTCAGAGAGAAACTGGCGATTAGGAAGATGGATGAGAGGTCATGGGAAGCATGTGCCAATGGAGGTAGAATTCAGTTTCAAAGCCCCCGAAATGGCATTCGCAGTCCGAATTTAGCGCATGTTCATGCTCTCAAACAGGGGAATCCTACAGAAATTTTTGGCTCTCCAACCCCACCAGTAAATAATAATCACGAGCAGCTTGTCAATGGAGGCAGAGATGAATTTTGTCTTAATCCCTATCAATCACAAAAGCTGGTCCAAATGCAAATTGATTTCTCTGTAGCAACAGCAAGGCCACCTTCTGTGATTAACCGTGTTGGCGCAGATTCAGAGCATTCAGATGTAGAGCCTCAATGCAAAGAAGAGGGGCCTGGTGCCGATGAAAGACGGCCACGCAAACGAGGCAGAAAGCCTGCAAATGGCAGGGAGGAACCTCTAAATCACGTGGAGGCGGAGAGACAGCGCCGTGAAAAGTTGAACCAGCGGTTCTATGCTTTACGAGCTGTTGTGCCCAACATCTCCAAGATGGACAAAGCTTCACTGCTAGGAGATGCCATTGCTTACATTAACGAGCTTCAAGCAAAAGTTAAGGCCATGGAATTTGAACGGGAGAAATCTGGCATCACCTCGAGTGAAGCAACCCCTTCGGAGGTGAACCCAGAAATTGAAAACAAAGATCAATTCCTCGATGTTGACATTGATGTTGAAGCGGCTAACGATGAAGTCATCGTTAAGGTTAGCTGCCCATTAGAGTCACACCCTGCATCAAGAGTTATCAAGGCAATGAAAGATGCTCAGATCAATGTCGTTGATTCAACACTCTCTGAAGCAAATGATACAGTTTTGCACACGTTTGTCATCAAGTCTCCCGGACCCGAGCAGTTGACGAAGGAACAGTTGATAGCCGCCTTTTCTCGGGATTCCACTCCGTTACATCCTTTATCAACAGTTGGGTAG 1857 46.42 MKIEDGLRSVGGKDEDKTVVAAVLGTRAFNYLMSCSVSNENLFMAVRNDENLQNKLSDLVERPNASNFRWNYAIFWQLSHSKSGEWVLGWGDGSCRDPRDGGEGTEATQIFSLGLEDESQQRMKKRALQKLHTLFGGSDEDNYALGLDRVTDTEMFFLASMYFSFPRGEGGPGKCLASGKHIWHLDVLNSPAEYCVRSYLAKSAGIRTVVLVPTDVGVVELGSVRSVSESLELVQLIRSMFSSQHSLDRVRTSAAMSMIAERKDENTPFPSLGIAERGDGGGVPKVFGQSLNSGNMGRSHFREKLAIRKMDERSWEACANGGRIQFQSPRNGIRSPNLAHVHALKQGNPTEIFGSPTPPVNNNHEQLVNGGRDEFCLNPYQSQKLVQMQIDFSVATARPPSVINRVGADSEHSDVEPQCKEEGPGADERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKVKAMEFEREKSGITSSEATPSEVNPEIENKDQFLDVDIDVEAANDEVIVKVSCPLESHPASRVIKAMKDAQINVVDSTLSEANDTVLHTFVIKSPGPEQLTKEQLIAAFSRDSTPLHPLSTVG 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1311704 1314990 + Tan0002270.1 Tan10g0111 764905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0111 618 MobiDBLite consensus disorder prediction 404 454 - -
Tan10g0111 618 CDD bHLH_AtAIB_like 440 513 - -
Tan10g0111 618 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 446 505 IPR036638 GO:0046983(InterPro)
Tan10g0111 618 Pfam Helix-loop-helix DNA-binding domain 447 493 IPR011598 GO:0046983(InterPro)
Tan10g0111 618 Gene3D - 436 506 IPR036638 GO:0046983(InterPro)
Tan10g0111 618 FunFam Transcription factor bHLH13 436 509 - -
Tan10g0111 618 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 443 492 IPR011598 GO:0046983(InterPro)
Tan10g0111 618 PANTHER MYC 41 606 IPR045084 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)
Tan10g0111 618 SMART finulus 449 498 IPR011598 GO:0046983(InterPro)
Tan10g0111 618 MobiDBLite consensus disorder prediction 409 454 - -
Tan10g0111 618 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 241 IPR025610 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan07g1978 Tan-Chr7:71506523 Tan10g0111 Tan-Chr10:1311704 4.50E-56 dispersed
Tan07g2244 Tan-Chr7:73849917 Tan10g0111 Tan-Chr10:1311704 2.20E-74 dispersed
Tan07g2245 Tan-Chr7:73849917 Tan10g0111 Tan-Chr10:1311704 2.20E-74 dispersed
Tan08g0898 Tan-Chr8:11974965 Tan10g0111 Tan-Chr10:1311704 6.50E-11 dispersed
Tan09g1736 Tan-Chr9:68878886 Tan10g0111 Tan-Chr10:1311704 2.20E-09 dispersed
Tan10g0111 Tan-Chr10:1311704 Tan11g1947 Tan-Chr11:31004043 5.90E-08 dispersed
Tan10g0111 Tan-Chr10:1311704 Tan01g2188 Tan-Chr1:25750967 2.60E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28465 PF14215 bHLH-MYC_N 9.70E-53 CL0161 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0111 - - - 0.0