Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0127 ATGGATCGACCCCTTATGATCGTTGCTTGTGTTCTTCGTTCATTCATTGACTTATTTTATCTACTTCACATGATCTTTGAATTTCGAACTGGTTTTCTGCCCCCTTCTTTACCAGTATTTGGAAGTGGTGAATTAATCGAAGATCCAACAGCTATAGCAAAGAGATACCTCTCCTCAAACTTCTTGGTTGATATCTTATCCATTCTCCCACTGCCTCAGCTTTTGGTATTAGTAATCATACCTGCAGCGAAAGGCCCGGTTCCATTGAAGACGAAAAAAGTCGTGAAGCTTGCAGTTCTTTTGCAATATATTCCAAGGCTTCTTCGAATTTATCCACTATACAGAGAAGTAACCAGAACTTCTGGCATACTGACAGAAACTGCTTGGAGTGGAGCTGCCTTCAATCTTCTTATTTATATGCAAGCTAGTCATGTAGTTGGTGCCATTTGGTATTTGTTATCAATAGAACGACAAACAATATGCTGGCTCAAGGCATGCAAAGATAATAGCTGTACCGACAGTTTTCTCTACTGTGGAGATCCTAGTAAAGCAAGAGCCTTGTCTATAAAGGAGTATTGCTCTCCTAAGGAGTCTGAAAAGGACAAGAACTTTGACTATGGGATGTATGCTGAAGCCCTTAAGTTTGAGTTAACTGAGACGATGAGTTTTCGCCGCAAATTCTTCTATTCCTTTTGGTGGGCTCTGCGAAATGTTGGCTCTAGTGGACAAAACCTTGAAGTAAGCCATTACATGGGGGAGGTTTTTTTTGCTGTCTTCATTGCCATCCTTGGTTTGGTTTTGTTTGCCTTACTCATTAGCAATATTCAGAAATATCTGCAGTCAACAACTGTTAAAGTAGAGCAGATGAGAATTAACCGAAGAGATGCCGAGCATTGGATGGCACATCGTATGCTCCCGGAGGAATTGAGGCATCGTATTAGACGATACGATCAGTACAAATGGCAGCTAAACAGGGGAGTTAAGGAAGAGGAACTCATCAGCAACCTTCCTAAAGACCTTAGGAGAGACATCAAACGCCATCTTTGCTTGGCCCTTCTTAAGAAAGTGCCACTTTTTAGCAGCATGGATAAGCAACTGTTGGACTCGATGTGTGAATATCTCAAGCCTGTGTTATTCACAGAGAAGAGCTTCATTCTGCAAGAGGGTGACCCAATTGATATGATGCTATTTATCATGAAAGGAAAGCTGGCTACCATTATTACTTACGGTTGGAAAAACGACTCTTACTCGGCCATTCTTAACGCTGGAGACTTTTGTGGTGAAGAGCTAGTTCAATGGGCAATGGATCCAACCTCCACTTCTCTTCCCATTTCAGCCAGAACAGTTAAATCTCTAACTGAGGTTGAAGCCTTTGCTCTAAAGGCTGATGAGCTGAAATTTGTAACTAGTCAGTTCCGCTTCCAGCGCCTCAATAGCAAGCAATTCCAACTCTCAGTGAGGTTCTACTCTCATCAATGGAAAGTTTGGGCAGCCTATAAAATACAAGAAGCTTGGCATGATTACCGTGAAAGAAAGAAGAGAGGGGGTGGAGATGGCAGGTTTCAAGATGCATTGGCTAAAACAGTTAGTGCCTCGGCGAGCTTCGGCGCCACTCTATATGCATCCATATTCATATCACATCTACTGCAAGCTGTGCAGCGAGATCAACACCAGAAAACTGCTCAATTCACACGAGTGATGACGCTACCACCTCCTCCGAAGCCAGACGACGAGCAAGGCAAGCCAAACTTCTCCATCTTGAATCTTTAA 1770 42.82 MDRPLMIVACVLRSFIDLFYLLHMIFEFRTGFLPPSLPVFGSGELIEDPTAIAKRYLSSNFLVDILSILPLPQLLVLVIIPAAKGPVPLKTKKVVKLAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYLLSIERQTICWLKACKDNSCTDSFLYCGDPSKARALSIKEYCSPKESEKDKNFDYGMYAEALKFELTETMSFRRKFFYSFWWALRNVGSSGQNLEVSHYMGEVFFAVFIAILGLVLFALLISNIQKYLQSTTVKVEQMRINRRDAEHWMAHRMLPEELRHRIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKRHLCLALLKKVPLFSSMDKQLLDSMCEYLKPVLFTEKSFILQEGDPIDMMLFIMKGKLATIITYGWKNDSYSAILNAGDFCGEELVQWAMDPTSTSLPISARTVKSLTEVEAFALKADELKFVTSQFRFQRLNSKQFQLSVRFYSHQWKVWAAYKIQEAWHDYRERKKRGGGDGRFQDALAKTVSASASFGATLYASIFISHLLQAVQRDQHQKTAQFTRVMTLPPPPKPDDEQGKPNFSILNL 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1398240 1404758 - Tan0004145.1 Tan10g0127 764921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0127 589 SUPERFAMILY cAMP-binding domain-like 287 472 IPR018490 -
Tan10g0127 589 CDD CAP_ED 358 489 IPR000595 -
Tan10g0127 589 Pfam Ion transport protein 11 284 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan10g0127 589 MobiDBLite consensus disorder prediction 567 589 - -
Tan10g0127 589 FunFam Cyclic nucleotide-gated ion channel 1 285 349 - -
Tan10g0127 589 ProSiteProfiles cAMP/cGMP binding motif profile. 358 442 IPR000595 -
Tan10g0127 589 SMART cnmp_10 358 487 IPR000595 -
Tan10g0127 589 Gene3D Helix hairpin bin 284 349 - -
Tan10g0127 589 Gene3D - 2 282 - -
Tan10g0127 589 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 550 - -
Tan10g0127 589 SUPERFAMILY Voltage-gated potassium channels 5 280 - -
Tan10g0127 589 Gene3D Jelly Rolls 356 474 IPR014710 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g0127 Tan-Chr10:1398240 Tan10g0129 Tan-Chr10:1398240 0.00E+00 dispersed
Tan10g0127 Tan-Chr10:1398240 Tan10g0128 Tan-Chr10:1398240 0.00E+00 tandem
Tan01g0130 Tan-Chr1:1248948 Tan10g0127 Tan-Chr10:1398240 2.10E-59 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0127 K05391 - csv:101206492 940.643