Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0128 ATGGGTTCCCATATACCAAAAACTGTAAGGTTTGGACAACCAACTTCTGAATTCCATGACAAATATGGAGGTTACCAAAACAGAAACAGACTGTCTCCAAGGTCAATATTGGAATGCATACAGAGAGGATTTGCCAGAGCTTCTAAGAGCTTTAGAAGGATAATAGCACAGCCAGGATTCAAGCATTCAGGTGATCAGTCAGTAAAGAAACCAGAGTTTTGGAAGAAAATTCTTGATCCACAGAAGCCATTTCTTCAGCAATGGAACAAGATATTTGTGTTGTCCTCTGTCATAGCAGTAGCTGTGGACCCTCTCTTCTTTTACATCCCAGTGTTTGATAAAGACCATCAATGCCTGACCATGGATCGACCCCTTATGATCGTTGCTTGTGTTCTTCGTTCATTCATTGACTTATTTTATCTACTTCACATGATCTTTGAATTTCGAACTGGTTTTCTGCCCCCTTCTTTACCAGTATTTGGAAGTGGTGAATTAATCGAAGATCCAACAGCTATAGCAAAGAGATACCTCTCCTCAAACTTCTTGGTTGATATCTTATCCATTCTCCCACTGCCTCAGCTTTTGGTATTAGTAATCATACCTGCAGCGAAAGGCCCGGTTCCATTGAAGACGAAAAAAGTCGTGAAGCTTGCAGTTCTTTTGCAATATATTCCAAGGCTTCTTCGAATTTATCCACTATACAGAGAAGTAACCAGAACTTCTGGCATACTGACAGAAACTGCTTGGAGTGGAGCTGCCTTCAATCTTCTTATTTATATGCAAGCTAGTCATGTAGTTGGTGCCATTTGGTATTTGTTATCAATAGAACGACAAACAATATGCTGGCTCAAGGCATGCAAAGATAATAGCTGTACCGACAGTTTTCTCTACTGTGGAGATCCTAGTAAAGCAAGAGCCTTGTCTATAAAGGAGTATTGCTCTCCTAAGGAGTCTGAAAAGGACAAGAACTTTGACTATGGGATGTATGCTGAAGCCCTTAAGTTTGAGTTAACTGAGACGATGAGTTTTCGCCGCAAATTCTTCTATTCCTTTTGGTGGGCTCTGCGAAATGTTGGCTCTAGTGGACAAAACCTTGAAGTAAGCCATTACATGGGGGAGGTTTTTTTTGCTGTCTTCATTGCCATCCTTGGTTTGGTTTTGTTTGCCTTACTCATTAGCAATATTCAGAAATATCTGCAGTCAACAACTGTTAAAGTAGAGCAGATGAGAATTAACCGAAGAGATGCCGAGCATTGGATGGCACATCGTATGCTCCCGGAGGAATTGAGGCATCGTATTAGACGATACGATCAGTACAAATGGCAGCTAAACAGGGGAGTTAAGGAAGAGGAACTCATCAGCAACCTTCCTAAAGACCTTAGGAGAGACATCAAACGCCATCTTTGCTTGGCCCTTCTTAAGAAAGTGCCACTTTTTAGCAGCATGGATAAGCAACTGTTGGACTCGATGTGTGAATATCTCAAGCCTGTGTTATTCACAGAGAAGAGCTTCATTCTGCAAGAGGGTGACCCAATTGATATGATGCTATTTATCATGAAAGGAAAGCTGGCTACCATTATTACTTACGGTTGGAAAAACGACTCTTACTCGGCCATTCTTAACGCTGGAGACTTTTGTGGTGAAGAGCTAGTTCAATGGGCAATGGATCCAACCTCCACTTCTCTTCCCATTTCAGCCAGAACAGTTAAATCTCTAACTGAGGTTGAAGCCTTTGCTCTAAAGGCTGATGAGCTGAAATTTGTAACTAGTCAGTTCCGCTTCCAGCGCCTCAATAGCAAGCAATTCCAACTCTCAGTGAGGTTCTACTCTCATCAATGGAAAGTTTGGGCAGCCTATAAAATACAAGAAGCTTGGCATGATTACCGTGAAAGAAAGAAGAGAGGGGGTGGAGATGGCAGGTTTCAAGATGCATTGGCTAAAACAGTTAGTGCCTCGGCGAGCTTCGGCGCCACTCTATATGCATCCATATTCATATCACATCTACTGCAAGCTGTGCAGCGAGATCAACACCAGAAAACTGCTCAATTCACACGAGTGATGACGCTACCACCTCCTCCGAAGCCAGACGACGAGCAAGGCAAGCCAAACTTCTCCATCTTGAATCTTTAA 2130 42.49 MGSHIPKTVRFGQPTSEFHDKYGGYQNRNRLSPRSILECIQRGFARASKSFRRIIAQPGFKHSGDQSVKKPEFWKKILDPQKPFLQQWNKIFVLSSVIAVAVDPLFFYIPVFDKDHQCLTMDRPLMIVACVLRSFIDLFYLLHMIFEFRTGFLPPSLPVFGSGELIEDPTAIAKRYLSSNFLVDILSILPLPQLLVLVIIPAAKGPVPLKTKKVVKLAVLLQYIPRLLRIYPLYREVTRTSGILTETAWSGAAFNLLIYMQASHVVGAIWYLLSIERQTICWLKACKDNSCTDSFLYCGDPSKARALSIKEYCSPKESEKDKNFDYGMYAEALKFELTETMSFRRKFFYSFWWALRNVGSSGQNLEVSHYMGEVFFAVFIAILGLVLFALLISNIQKYLQSTTVKVEQMRINRRDAEHWMAHRMLPEELRHRIRRYDQYKWQLNRGVKEEELISNLPKDLRRDIKRHLCLALLKKVPLFSSMDKQLLDSMCEYLKPVLFTEKSFILQEGDPIDMMLFIMKGKLATIITYGWKNDSYSAILNAGDFCGEELVQWAMDPTSTSLPISARTVKSLTEVEAFALKADELKFVTSQFRFQRLNSKQFQLSVRFYSHQWKVWAAYKIQEAWHDYRERKKRGGGDGRFQDALAKTVSASASFGATLYASIFISHLLQAVQRDQHQKTAQFTRVMTLPPPPKPDDEQGKPNFSILNL 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1398240 1403536 - Tan0004145.2 Tan10g0128 764922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0128 709 Pfam Ion transport protein 93 404 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tan10g0128 709 SUPERFAMILY Voltage-gated potassium channels 79 400 - -
Tan10g0128 709 FunFam Cyclic nucleotide-gated ion channel 1 405 469 - -
Tan10g0128 709 SUPERFAMILY cAMP-binding domain-like 407 592 IPR018490 -
Tan10g0128 709 MobiDBLite consensus disorder prediction 687 709 - -
Tan10g0128 709 ProSiteProfiles cAMP/cGMP binding motif profile. 478 562 IPR000595 -
Tan10g0128 709 SMART cnmp_10 478 607 IPR000595 -
Tan10g0128 709 Gene3D - 90 402 - -
Tan10g0128 709 CDD CAP_ED 478 609 IPR000595 -
Tan10g0128 709 Gene3D Helix hairpin bin 404 469 - -
Tan10g0128 709 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 66 670 - -
Tan10g0128 709 Gene3D Jelly Rolls 476 594 IPR014710 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g2232 Tan-Chr9:72293772 Tan10g0128 Tan-Chr10:1398240 1.60E-150 dispersed
Tan10g0128 Tan-Chr10:1398240 Tan10g0130 Tan-Chr10:1398240 0.00E+00 dispersed
Tan10g0127 Tan-Chr10:1398240 Tan10g0128 Tan-Chr10:1398240 0.00E+00 tandem
Tan10g0128 Tan-Chr10:1398240 Tan10g0129 Tan-Chr10:1398240 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0128 K05391 - csv:101206492 1090.1