Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0227 ATGGGAGGCTGCTGCTGTTCGACCCGAAAATCTCATGTGAATGGAACTCCAGCATACTACTATTGCCCGCTGGCTATGGAGGAGCGTGAGTCATCTGAGATTCGTAGTGGCTCAGCCTCCATGCTCCACAATGCAGGACGAGATTTGGACCTGGATTTGTCGATACCAAACACATACCGAGCGCCTCCCACACCTCTCCCGTATGATGTGGTTTTGAGATGTCCACAACCAAAAGATCTTAACTCTATCAAAGAAACAATCTGTGGATGTAGTTTTAAAACTTCATCAGCAGTGAAAACTGTTGGGGAACTGGATAGTAAGTCCCAAGACAGCCCTTTGCTTGGAGGCCCTCCACGAAAACTGGAACATTCAAAGTCGAAAGGGCATGATACTCCGACTCTGATCGCCGAAGAAGAGGACGTCTGTCCCATTTGTCTCGAAGACTATAATTCAGAACATCCAGAAATTAACACAAAATGCAAGCACCACTTTCACCTCGCTTGCCTTCTCGAGTGGACTGAAAGAAGTGATGCATGTCCGATCTGCGACAAGGAGATGATATTTGAACTACCTTGA 576 46.88 MGGCCCSTRKSHVNGTPAYYYCPLAMEERESSEIRSGSASMLHNAGRDLDLDLSIPNTYRAPPTPLPYDVVLRCPQPKDLNSIKETICGCSFKTSSAVKTVGELDSKSQDSPLLGGPPRKLEHSKSKGHDTPTLIAEEEDVCPICLEDYNSEHPEINTKCKHHFHLACLLEWTERSDACPICDKEMIFELP 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2084836 2088565 - Tan0008521.1 Tan10g0227 765021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0227 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 188 IPR013083 -
Tan10g0227 191 Pfam Ring finger domain 141 182 IPR001841 -
Tan10g0227 191 MobiDBLite consensus disorder prediction 103 132 - -
Tan10g0227 191 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 188 - GO:0004842(PANTHER)
Tan10g0227 191 ProSiteProfiles Zinc finger RING-type profile. 142 183 IPR001841 -
Tan10g0227 191 SUPERFAMILY RING/U-box 133 188 - -
Tan10g0227 191 SMART ring_2 142 182 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan07g1621 Tan-Chr7:67640142 Tan10g0227 Tan-Chr10:2084836 4.90E-31 dispersed
Tan10g0227 Tan-Chr10:2084836 Tan10g0229 Tan-Chr10:2084836 1.60E-113 dispersed
Tan10g0227 Tan-Chr10:2084836 Tan10g0228 Tan-Chr10:2084836 2.40E-109 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0227 - - - 0.0