Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0228 ATGGGAGGCTGCTGCTGTTCGACCCGAAAATCTCATGTGAATGGAACTCCAGCATACTACTATTGCCCGCTGGCTATGGAGGAGCGTGAGTCATCTGAGATTCGTAGTGGCTCAGCCTCCATGCTCCACAATGCAGGACGAGATTTGGACCTGGATTTGTCGATACCAAACACATACCGAGCGCCTCCCACACCTCTCCCGTATGATGTGGTTTTGAGATGTCCACAACCAAAAGATCTTAACTCTATCAAAGAAACAATCTGTGGATGTAGTTTTAAAACTTCATCAGCAGTGAAAACTGTTGGGGAACTGGATAGTAAGTCCCAAGACAGCCCTTTGCTTGGAGGCCCTCCACGAAAACTGGAACATTCAAAGTCGAAAGGGCATGATACTCCGACTCTGATCGCCGAAGAAGAGGACGTCTGTCCCATTTGTCTCGAAGACTATAATTCAGAACATCCAGAAATTAACACAAAATGCAAGCACCACTTTCACCTCGCTTGCCTTCTCGAGTGGACTGAAAGAAGTGATGCATGTCCGATCTGCGACAAGGTTTGTTCTAACACGCCACGAGCATGA 579 47.5 MGGCCCSTRKSHVNGTPAYYYCPLAMEERESSEIRSGSASMLHNAGRDLDLDLSIPNTYRAPPTPLPYDVVLRCPQPKDLNSIKETICGCSFKTSSAVKTVGELDSKSQDSPLLGGPPRKLEHSKSKGHDTPTLIAEEEDVCPICLEDYNSEHPEINTKCKHHFHLACLLEWTERSDACPICDKVCSNTPRA 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2084836 2088565 - Tan0008521.2 Tan10g0228 765022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0228 192 MobiDBLite consensus disorder prediction 102 132 - -
Tan10g0228 192 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 190 IPR013083 -
Tan10g0228 192 Pfam Ring finger domain 141 182 IPR001841 -
Tan10g0228 192 ProSiteProfiles Zinc finger RING-type profile. 142 183 IPR001841 -
Tan10g0228 192 SUPERFAMILY RING/U-box 133 187 - -
Tan10g0228 192 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 187 - GO:0004842(PANTHER)
Tan10g0228 192 SMART ring_2 142 182 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g0228 Tan-Chr10:2084836 Tan10g0231 Tan-Chr10:2084836 4.20E-114 dispersed
Tan10g0227 Tan-Chr10:2084836 Tan10g0228 Tan-Chr10:2084836 2.40E-109 tandem
Tan10g0228 Tan-Chr10:2084836 Tan10g0229 Tan-Chr10:2084836 5.30E-109 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0228 - - - 0.0