Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0229 ATGGCAAATTGGCGTCCGCCATCAGCTCTTGAAAGCGACTCGCTTGGATTGAAGTTTGAGCCCAAAATTGCACTGCTCAACAAAACAATACAACACACCGGCGCCACTTTCTTTCTCAGGAATCATCAAAGAATGGGAGGCTGCTGCTGTTCGACCCGAAAATCTCATGTGAATGGAACTCCAGCATACTACTATTGCCCGCTGGCTATGGAGGAGCGTGAGTCATCTGAGATTCGTAGTGGCTCAGCCTCCATGCTCCACAATGCAGGACGAGATTTGGACCTGGATTTGTCGATACCAAACACATACCGAGCGCCTCCCACACCTCTCCCGTATGATGTGGTTTTGAGATGTCCACAACCAAAAGATCTTAACTCTATCAAAGAAACAATCTGTGGATGTAGTTTTAAAACTTCATCAGCAGTGAAAACTGTTGGGGAACTGGATAGTAAGTCCCAAGACAGCCCTTTGCTTGGAGGCCCTCCACGAAAACTGGAACATTCAAAGTCGAAAGGGCATGATACTCCGACTCTGATCGCCGAAGAAGAGGACGTCTGTCCCATTTGTCTCGAAGACTATAATTCAGAACATCCAGAAATTAACACAAAATGCAAGCACCACTTTCACCTCGCTTGCCTTCTCGAGTGGACTGAAAGAAGTGATGCATGTCCGATCTGCGACAAGGAGATGATATTTGAACTACCTTGA 708 46.75 MANWRPPSALESDSLGLKFEPKIALLNKTIQHTGATFFLRNHQRMGGCCCSTRKSHVNGTPAYYYCPLAMEERESSEIRSGSASMLHNAGRDLDLDLSIPNTYRAPPTPLPYDVVLRCPQPKDLNSIKETICGCSFKTSSAVKTVGELDSKSQDSPLLGGPPRKLEHSKSKGHDTPTLIAEEEDVCPICLEDYNSEHPEINTKCKHHFHLACLLEWTERSDACPICDKEMIFELP 235
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 2084836 2088791 - Tan0008521.3 Tan10g0229 765023
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0229 235 MobiDBLite consensus disorder prediction 146 176 - -
Tan10g0229 235 SMART ring_2 186 226 IPR001841 -
Tan10g0229 235 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 45 232 - GO:0004842(PANTHER)
Tan10g0229 235 SUPERFAMILY RING/U-box 177 232 - -
Tan10g0229 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 232 IPR013083 -
Tan10g0229 235 Pfam Ring finger domain 185 226 IPR001841 -
Tan10g0229 235 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g0227 Tan-Chr10:2084836 Tan10g0229 Tan-Chr10:2084836 1.60E-113 dispersed
Tan10g0229 Tan-Chr10:2084836 Tan10g0231 Tan-Chr10:2084836 4.80E-136 dispersed
Tan10g0228 Tan-Chr10:2084836 Tan10g0229 Tan-Chr10:2084836 5.30E-109 tandem
Tan10g0229 Tan-Chr10:2084836 Tan10g0230 Tan-Chr10:2084836 2.60E-113 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0229 - - - 0.0