Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tan10g0229 | ATGGCAAATTGGCGTCCGCCATCAGCTCTTGAAAGCGACTCGCTTGGATTGAAGTTTGAGCCCAAAATTGCACTGCTCAACAAAACAATACAACACACCGGCGCCACTTTCTTTCTCAGGAATCATCAAAGAATGGGAGGCTGCTGCTGTTCGACCCGAAAATCTCATGTGAATGGAACTCCAGCATACTACTATTGCCCGCTGGCTATGGAGGAGCGTGAGTCATCTGAGATTCGTAGTGGCTCAGCCTCCATGCTCCACAATGCAGGACGAGATTTGGACCTGGATTTGTCGATACCAAACACATACCGAGCGCCTCCCACACCTCTCCCGTATGATGTGGTTTTGAGATGTCCACAACCAAAAGATCTTAACTCTATCAAAGAAACAATCTGTGGATGTAGTTTTAAAACTTCATCAGCAGTGAAAACTGTTGGGGAACTGGATAGTAAGTCCCAAGACAGCCCTTTGCTTGGAGGCCCTCCACGAAAACTGGAACATTCAAAGTCGAAAGGGCATGATACTCCGACTCTGATCGCCGAAGAAGAGGACGTCTGTCCCATTTGTCTCGAAGACTATAATTCAGAACATCCAGAAATTAACACAAAATGCAAGCACCACTTTCACCTCGCTTGCCTTCTCGAGTGGACTGAAAGAAGTGATGCATGTCCGATCTGCGACAAGGAGATGATATTTGAACTACCTTGA | 708 | 46.75 | MANWRPPSALESDSLGLKFEPKIALLNKTIQHTGATFFLRNHQRMGGCCCSTRKSHVNGTPAYYYCPLAMEERESSEIRSGSASMLHNAGRDLDLDLSIPNTYRAPPTPLPYDVVLRCPQPKDLNSIKETICGCSFKTSSAVKTVGELDSKSQDSPLLGGPPRKLEHSKSKGHDTPTLIAEEEDVCPICLEDYNSEHPEINTKCKHHFHLACLLEWTERSDACPICDKEMIFELP | 235 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 2084836 | 2088791 | - | Tan0008521.3 | Tan10g0229 | 765023 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tan10g0229 | 235 | MobiDBLite | consensus disorder prediction | 146 | 176 | - | - | |
| Tan10g0229 | 235 | SMART | ring_2 | 186 | 226 | IPR001841 | - | |
| Tan10g0229 | 235 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 45 | 232 | - | GO:0004842(PANTHER) | |
| Tan10g0229 | 235 | SUPERFAMILY | RING/U-box | 177 | 232 | - | - | |
| Tan10g0229 | 235 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 163 | 232 | IPR013083 | - | |
| Tan10g0229 | 235 | Pfam | Ring finger domain | 185 | 226 | IPR001841 | - | |
| Tan10g0229 | 235 | ProSiteProfiles | Zinc finger RING-type profile. | 186 | 227 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Tan10g0227 | Tan-Chr10:2084836 | Tan10g0229 | Tan-Chr10:2084836 | 1.60E-113 | dispersed | |
| Tan10g0229 | Tan-Chr10:2084836 | Tan10g0231 | Tan-Chr10:2084836 | 4.80E-136 | dispersed | |
| Tan10g0228 | Tan-Chr10:2084836 | Tan10g0229 | Tan-Chr10:2084836 | 5.30E-109 | tandem | |
| Tan10g0229 | Tan-Chr10:2084836 | Tan10g0230 | Tan-Chr10:2084836 | 2.60E-113 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tan10g0229 | - | - | - | 0.0 |