Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0231 ATGGCAAATTGGCGTCCGCCATCAGCTCTTGAAAGCGACTCGCTTGGATTGAAGTTTGAGCCCAAAATTGCACTGCTCAACAAAACAATACAACACACCGGCGCCACTTTCTTTCTCAGGAATCATCAAAGAATGGGAGGCTGCTGCTGTTCGACCCGAAAATCTCATGTGAATGGAACTCCAGCATACTACTATTGCCCGCTGGCTATGGAGGAGCGTGAGTCATCTGAGATTCGTAGTGGCTCAGCCTCCATGCTCCACAATGCAGGACGAGATTTGGACCTGGATTTGTCGATACCAAACACATACCGAGCGCCTCCCACACCTCTCCCGTATGATGTGGTTTTGAGATGTCCACAACCAAAAGATCTTAACTCTATCAAAGAAACAATCTGTGGATGTAGTTTTAAAACTTCATCAGCAGTGAAAACTGTTGGGGAACTGGATAGTAAGTCCCAAGACAGCCCTTTGCTTGGAGGCCCTCCACGAAAACTGGAACATTCAAAGTCGAAAGGGCATGATACTCCGACTCTGATCGCCGAAGAAGAGGACGTCTGTCCCATTTGTCTCGAAGACTATAATTCAGAACATCCAGAAATTAACACAAAATGCAAGCACCACTTTCACCTCGCTTGCCTTCTCGAGTGGACTGAAAGAAGTGATGCATGTCCGATCTGCGACAAGGTTTGTTCTAACACGCCACGAGCATGA 711 47.26 MANWRPPSALESDSLGLKFEPKIALLNKTIQHTGATFFLRNHQRMGGCCCSTRKSHVNGTPAYYYCPLAMEERESSEIRSGSASMLHNAGRDLDLDLSIPNTYRAPPTPLPYDVVLRCPQPKDLNSIKETICGCSFKTSSAVKTVGELDSKSQDSPLLGGPPRKLEHSKSKGHDTPTLIAEEEDVCPICLEDYNSEHPEINTKCKHHFHLACLLEWTERSDACPICDKVCSNTPRA 236
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 2084836 2088791 - Tan0008521.5 Tan10g0231 765025
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0231 236 MobiDBLite consensus disorder prediction 146 176 - -
Tan10g0231 236 SMART ring_2 186 226 IPR001841 -
Tan10g0231 236 SUPERFAMILY RING/U-box 177 231 - -
Tan10g0231 236 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 45 231 - GO:0004842(PANTHER)
Tan10g0231 236 Pfam Ring finger domain 185 226 IPR001841 -
Tan10g0231 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 234 IPR013083 -
Tan10g0231 236 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g0228 Tan-Chr10:2084836 Tan10g0231 Tan-Chr10:2084836 4.20E-114 dispersed
Tan10g0229 Tan-Chr10:2084836 Tan10g0231 Tan-Chr10:2084836 4.80E-136 dispersed
Tan10g0230 Tan-Chr10:2084836 Tan10g0231 Tan-Chr10:2084836 2.40E-109 tandem
Tan10g0231 Tan-Chr10:2084836 Tan10g0232 Tan-Chr10:2084836 6.80E-114 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0231 - - - 0.0