Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan10g0232 | ATGGGAGGCTGCTGCTGTTCGACCCGAAAATCTCATGTGAATGGAACTCCAGCATACTACTATTGCCCGCTGGCTATGGAGGAGCGTGAGTCATCTGAGATTCGTAGTGGCTCAGCCTCCATGCTCCACAATGCAGGACGAGATTTGGACCTGGATTTGTCGATACCAAACACATACCGAGCGCCTCCCACACCTCTCCCGTATGATGTGGTTTTGAGATGTCCACAACCAAAAGATCTTAACTCTATCAAAGAAACAATCTGTGGATGTAGTTTTAAAACTTCATCAGCAGTGAAAACTGTTGGGGAACTGGATAGTAAGTCCCAAGACAGCCCTTTGCTTGGAGGCCCTCCACGAAAACTGGAACATTCAAAGTCGAAAGGGCATGATACTCCGACTCTGATCGCCGAAGAAGAGGACGTCTGTCCCATTTGTCTCGAAGACTATAATTCAGAACATCCAGAAATTAACACAAAATGCAAGCACCACTTTCACCTCGCTTGCCTTCTCGAGTGGACTGAAAGAAGTGATGCATGTCCGATCTGCGACAAGGTTTGTTCTAACACGCCACGAGCATGA | 579 | 47.5 | MGGCCCSTRKSHVNGTPAYYYCPLAMEERESSEIRSGSASMLHNAGRDLDLDLSIPNTYRAPPTPLPYDVVLRCPQPKDLNSIKETICGCSFKTSSAVKTVGELDSKSQDSPLLGGPPRKLEHSKSKGHDTPTLIAEEEDVCPICLEDYNSEHPEINTKCKHHFHLACLLEWTERSDACPICDKVCSNTPRA | 192 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 2084836 | 2088791 | - | Tan0008521.6 | Tan10g0232 | 765026 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan10g0232 | 192 | MobiDBLite | consensus disorder prediction | 102 | 132 | - | - | |
Tan10g0232 | 192 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 119 | 190 | IPR013083 | - | |
Tan10g0232 | 192 | Pfam | Ring finger domain | 141 | 182 | IPR001841 | - | |
Tan10g0232 | 192 | ProSiteProfiles | Zinc finger RING-type profile. | 142 | 183 | IPR001841 | - | |
Tan10g0232 | 192 | SUPERFAMILY | RING/U-box | 133 | 187 | - | - | |
Tan10g0232 | 192 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 1 | 187 | - | GO:0004842(PANTHER) | |
Tan10g0232 | 192 | SMART | ring_2 | 142 | 182 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan10g0230 | Tan-Chr10:2084836 | Tan10g0232 | Tan-Chr10:2084836 | 2.40E-109 | dispersed | |
Tan10g0231 | Tan-Chr10:2084836 | Tan10g0232 | Tan-Chr10:2084836 | 6.80E-114 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan10g0232 | - | - | - | 0.0 |