Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan10g0239 | ATGTCTGTTTATGATGCTGCATTTTTCAACACGGAGCTTTCTAAACCGACCTCCATTTTCGGCCTTCGTCTCTGGGTTGTAATCGGAATCTTAGTCGGAGCCCTAATAGTTCTCGCACTGTTTCTTCTTTCACTTTGCCTCACTTCTCGCAAGCGGAATCGCCATAAGAACCAAATCTGTCTCCCTAAGTCCACAACTGACCATTCTCCTCCCATTTCGAAAGAGATCCAGGAGATAGTCCATCATGCAGTGCCGGATCATCACCACCATCTTCAGCCGGAAATTCATGTCGAGATCGGAAAATTGGAGCATCGGGTTGTTTTCTCTGATAGACCGTCTAGTGGTGAGAGCAGAGGCGCTGTGAGTGAAACTGCTTCTTTTGGATCTGGTACTGTTGGGCCTGAGGTTTCGCATCTGGGTTGGGGCAGATGGTACACTCTGAGAGAGCTTGAGGCCGCCACTAATGGTTTGTGCGAAGAGAACGTGATTGGAGAAGGTGGATATGGGATCGTGTATTTAGGCATTTTGGGAGATGGTACCAGAATTGCTATCAAGAACCTCTTGAATAACAGGGGTCAAGCTGAGAGGGAATTTAAAGTGGAAGTTGAAGCAATTGGACGAGTAAGACACAAGAATCTTGTCAGGTTGCTGGGATATTGCGTCGAGGGTGCATATAGAATGCTTGTTTATGAGTACGTTAACAATGGCAATCTAGACCAATGGCTTCATGGCGATGTCGGGGATGTGAGCCCCTTGACGTGGGAGATTCGTGTTAACATCATACTCGGAACAGCAAAAGGATTAGCCTATCTTCATGAGGGTCTTGAACCAAAGGTTGTCCATCGTGATGTAAAATCTAGCAACATACTGCTTGATCGTCAGTGGAATGCTAAAGTATCTGATTTTGGGCTGGCCAAGCTTCTTTGTTCTGAAAGAAGCTACGTGACGACTCGTGTAATGGGTACATTTGGCTATGTTGCACCTGAGTACGCATGCACGGGAATGTTGAACGAGAAGAGTGATGTTTATAGTTTTGGAATTCTAATTATGGAGATAATTTCCGGGCGGAGCCCTGTTGATTATAGTAGACCCCAAGGAGAGGTAAATTTAGTGGATTGGTTGAAAGCAATGGTTGGAGACAGAAAATCTGAGGAAGTGGTTGACCCCAAGTTGCCCGAGAAGCCTCCTTCCAAAGCTCTCAAACGTGTTTTGCTGGTTGGTCTTCGGTGTGTCGATCCTGATGCTTCAAAGAGGCCGAAAATGGGGCATGTTATCCACATGCTTGAGGCAGATAATTTGCTGTCTAATGATGAACACCGGGTCGGTAAGGATTCTTCTCACTCAATTCAAGGTCATCGACATGAGAACCGGACCGTTCCAAGACAAGTTAACCATCAGAAAGACCAAGGAACATCTTCTAATATAAGTGAAGGTGACAGTGATGGAAACATTCAACATCCAATTAGGTGGAGATAA | 1476 | 45.6 | MSVYDAAFFNTELSKPTSIFGLRLWVVIGILVGALIVLALFLLSLCLTSRKRNRHKNQICLPKSTTDHSPPISKEIQEIVHHAVPDHHHHLQPEIHVEIGKLEHRVVFSDRPSSGESRGAVSETASFGSGTVGPEVSHLGWGRWYTLRELEAATNGLCEENVIGEGGYGIVYLGILGDGTRIAIKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVNNGNLDQWLHGDVGDVSPLTWEIRVNIILGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRQWNAKVSDFGLAKLLCSERSYVTTRVMGTFGYVAPEYACTGMLNEKSDVYSFGILIMEIISGRSPVDYSRPQGEVNLVDWLKAMVGDRKSEEVVDPKLPEKPPSKALKRVLLVGLRCVDPDASKRPKMGHVIHMLEADNLLSNDEHRVGKDSSHSIQGHRHENRTVPRQVNHQKDQGTSSNISEGDSDGNIQHPIRWR | 491 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 2138535 | 2141860 | - | Tan0018757.1 | Tan10g0239 | 765033 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan10g0239 | 491 | Pfam | Protein tyrosine and serine/threonine kinase | 160 | 427 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Tan10g0239 | 491 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 279 | 291 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Tan10g0239 | 491 | MobiDBLite | consensus disorder prediction | 436 | 462 | - | - | |
Tan10g0239 | 491 | SMART | serkin_6 | 157 | 428 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Tan10g0239 | 491 | FunFam | Probable serine/threonine-protein kinase At1g01540 | 137 | 232 | - | - | |
Tan10g0239 | 491 | MobiDBLite | consensus disorder prediction | 463 | 481 | - | - | |
Tan10g0239 | 491 | ProSitePatterns | Protein kinases ATP-binding region signature. | 163 | 185 | IPR017441 | GO:0005524(InterPro) | |
Tan10g0239 | 491 | MobiDBLite | consensus disorder prediction | 436 | 491 | - | - | |
Tan10g0239 | 491 | SUPERFAMILY | Protein kinase-like (PK-like) | 136 | 429 | IPR011009 | - | |
Tan10g0239 | 491 | FunFam | Putative receptor-like serine/threonine-protein kinase | 233 | 443 | - | - | |
Tan10g0239 | 491 | PANTHER | OS01G0323000 PROTEIN | 8 | 468 | IPR052232 | - | |
Tan10g0239 | 491 | ProSiteProfiles | Protein kinase domain profile. | 157 | 434 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Tan10g0239 | 491 | CDD | STKc_IRAK | 163 | 429 | - | - | |
Tan10g0239 | 491 | Gene3D | Phosphorylase Kinase; domain 1 | 139 | 232 | - | - | |
Tan10g0239 | 491 | Gene3D | Transferase(Phosphotransferase) domain 1 | 233 | 445 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan03g1548 | Tan-Chr3:71788868 | Tan10g0239 | Tan-Chr10:2138535 | 1.20E-168 | dispersed | |
Tan08g0700 | Tan-Chr8:6920820 | Tan10g0239 | Tan-Chr10:2138535 | 7.60E-128 | dispersed | |
Tan10g0239 | Tan-Chr10:2138535 | Tan11g0375 | Tan-Chr11:3035853 | 6.20E-77 | dispersed | |
Tan11g0336 | Tan-Chr11:2634873 | Tan10g0239 | Tan-Chr10:2138535 | 8.80E-51 | dispersed | |
Tan10g0239 | Tan-Chr10:2138535 | Tan02g1799 | Tan-Chr2:83362068 | 4.80E-170 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68112 | PF07714 | PK_Tyr_Ser-Thr | 3.90E-45 | CL0016 | Tan | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan10g0239 | - | - | - | 0.0 |