Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0239 ATGTCTGTTTATGATGCTGCATTTTTCAACACGGAGCTTTCTAAACCGACCTCCATTTTCGGCCTTCGTCTCTGGGTTGTAATCGGAATCTTAGTCGGAGCCCTAATAGTTCTCGCACTGTTTCTTCTTTCACTTTGCCTCACTTCTCGCAAGCGGAATCGCCATAAGAACCAAATCTGTCTCCCTAAGTCCACAACTGACCATTCTCCTCCCATTTCGAAAGAGATCCAGGAGATAGTCCATCATGCAGTGCCGGATCATCACCACCATCTTCAGCCGGAAATTCATGTCGAGATCGGAAAATTGGAGCATCGGGTTGTTTTCTCTGATAGACCGTCTAGTGGTGAGAGCAGAGGCGCTGTGAGTGAAACTGCTTCTTTTGGATCTGGTACTGTTGGGCCTGAGGTTTCGCATCTGGGTTGGGGCAGATGGTACACTCTGAGAGAGCTTGAGGCCGCCACTAATGGTTTGTGCGAAGAGAACGTGATTGGAGAAGGTGGATATGGGATCGTGTATTTAGGCATTTTGGGAGATGGTACCAGAATTGCTATCAAGAACCTCTTGAATAACAGGGGTCAAGCTGAGAGGGAATTTAAAGTGGAAGTTGAAGCAATTGGACGAGTAAGACACAAGAATCTTGTCAGGTTGCTGGGATATTGCGTCGAGGGTGCATATAGAATGCTTGTTTATGAGTACGTTAACAATGGCAATCTAGACCAATGGCTTCATGGCGATGTCGGGGATGTGAGCCCCTTGACGTGGGAGATTCGTGTTAACATCATACTCGGAACAGCAAAAGGATTAGCCTATCTTCATGAGGGTCTTGAACCAAAGGTTGTCCATCGTGATGTAAAATCTAGCAACATACTGCTTGATCGTCAGTGGAATGCTAAAGTATCTGATTTTGGGCTGGCCAAGCTTCTTTGTTCTGAAAGAAGCTACGTGACGACTCGTGTAATGGGTACATTTGGCTATGTTGCACCTGAGTACGCATGCACGGGAATGTTGAACGAGAAGAGTGATGTTTATAGTTTTGGAATTCTAATTATGGAGATAATTTCCGGGCGGAGCCCTGTTGATTATAGTAGACCCCAAGGAGAGGTAAATTTAGTGGATTGGTTGAAAGCAATGGTTGGAGACAGAAAATCTGAGGAAGTGGTTGACCCCAAGTTGCCCGAGAAGCCTCCTTCCAAAGCTCTCAAACGTGTTTTGCTGGTTGGTCTTCGGTGTGTCGATCCTGATGCTTCAAAGAGGCCGAAAATGGGGCATGTTATCCACATGCTTGAGGCAGATAATTTGCTGTCTAATGATGAACACCGGGTCGGTAAGGATTCTTCTCACTCAATTCAAGGTCATCGACATGAGAACCGGACCGTTCCAAGACAAGTTAACCATCAGAAAGACCAAGGAACATCTTCTAATATAAGTGAAGGTGACAGTGATGGAAACATTCAACATCCAATTAGGTGGAGATAA 1476 45.6 MSVYDAAFFNTELSKPTSIFGLRLWVVIGILVGALIVLALFLLSLCLTSRKRNRHKNQICLPKSTTDHSPPISKEIQEIVHHAVPDHHHHLQPEIHVEIGKLEHRVVFSDRPSSGESRGAVSETASFGSGTVGPEVSHLGWGRWYTLRELEAATNGLCEENVIGEGGYGIVYLGILGDGTRIAIKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVNNGNLDQWLHGDVGDVSPLTWEIRVNIILGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRQWNAKVSDFGLAKLLCSERSYVTTRVMGTFGYVAPEYACTGMLNEKSDVYSFGILIMEIISGRSPVDYSRPQGEVNLVDWLKAMVGDRKSEEVVDPKLPEKPPSKALKRVLLVGLRCVDPDASKRPKMGHVIHMLEADNLLSNDEHRVGKDSSHSIQGHRHENRTVPRQVNHQKDQGTSSNISEGDSDGNIQHPIRWR 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2138535 2141860 - Tan0018757.1 Tan10g0239 765033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0239 491 Pfam Protein tyrosine and serine/threonine kinase 160 427 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan10g0239 491 ProSitePatterns Serine/Threonine protein kinases active-site signature. 279 291 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Tan10g0239 491 MobiDBLite consensus disorder prediction 436 462 - -
Tan10g0239 491 SMART serkin_6 157 428 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan10g0239 491 FunFam Probable serine/threonine-protein kinase At1g01540 137 232 - -
Tan10g0239 491 MobiDBLite consensus disorder prediction 463 481 - -
Tan10g0239 491 ProSitePatterns Protein kinases ATP-binding region signature. 163 185 IPR017441 GO:0005524(InterPro)
Tan10g0239 491 MobiDBLite consensus disorder prediction 436 491 - -
Tan10g0239 491 SUPERFAMILY Protein kinase-like (PK-like) 136 429 IPR011009 -
Tan10g0239 491 FunFam Putative receptor-like serine/threonine-protein kinase 233 443 - -
Tan10g0239 491 PANTHER OS01G0323000 PROTEIN 8 468 IPR052232 -
Tan10g0239 491 ProSiteProfiles Protein kinase domain profile. 157 434 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Tan10g0239 491 CDD STKc_IRAK 163 429 - -
Tan10g0239 491 Gene3D Phosphorylase Kinase; domain 1 139 232 - -
Tan10g0239 491 Gene3D Transferase(Phosphotransferase) domain 1 233 445 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g1548 Tan-Chr3:71788868 Tan10g0239 Tan-Chr10:2138535 1.20E-168 dispersed
Tan08g0700 Tan-Chr8:6920820 Tan10g0239 Tan-Chr10:2138535 7.60E-128 dispersed
Tan10g0239 Tan-Chr10:2138535 Tan11g0375 Tan-Chr11:3035853 6.20E-77 dispersed
Tan11g0336 Tan-Chr11:2634873 Tan10g0239 Tan-Chr10:2138535 8.80E-51 dispersed
Tan10g0239 Tan-Chr10:2138535 Tan02g1799 Tan-Chr2:83362068 4.80E-170 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68112 PF07714 PK_Tyr_Ser-Thr 3.90E-45 CL0016 Tan PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0239 - - - 0.0