Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0253 ATGAAAATGGAAGTTGATTGGGATCTTCACGCCGTCGTCAGAGGCTACTCCGCTGCGCCGTCCGTCGCTGCAACCGCCGCCGTTCCCTCTTCTGACTTTTACTCTGTTTCTTCCAATTCCAATAACTCTGTTCCTTTTGCTTTTGGTAGAGACCTAACGAACCAAACAAACCATTTAGTCTCTCTTCAAGTTCAAGATCCATTTGATGGGTCGAATTGTAATTCTTCTGAGGAATTGCATGAGCTTTTCAAACCATTTTTCCCCAAATCTCAACCCTCTCCGCCGCCGCCTGCTCCACCGCTTCTTTCTTCTCCGCCGGCGAAGATTCTGTCCCATCAGAAGCAGCAACAGACCGCCCATCTTCTTAAACATATTCATTCGACCTCTGTTTCTGCTCCAAGATCCAAACGCCGGAAGAATCAGTTGAAGAAAGTCTGTCAAGTTCCGGCGGAGTCTCTGTCTTCTGACATTTGGGCTTGGCGAAAATATGGACAAAAACCCATCAAGGGATCTCCATATCCAAGGGGATATTACAGATGTAGCAGTTCAAAGGGTTGCATGGCCCGGAAACAAGTGGAGAGGAACAGATCCGACCCGGGAATGTTCATCGTCACTTACACGGCGGAACACAACCACCCGGCGCCGACTCATCGGAATTCCCTCGCCGGCTCCACCCGCCAGAAGCCCATAACGCCGCCTCCCGCCGCCGCAGGATCCGGATCCGAAAACCCCGACCCGAAGCAGCACGTTTGCTCGTCGGAAGACCAGAGTACGATCACGGAGAGCAAAGAAGAAGAGAAAGAGGAATTATTAGTCGAAGACGAAGAAGACGACGATCTGGGGGTCTCCGATTTGATCGTCAACGACGATTTCTACGTGGGTTTTGAAGAACTCGACAGTCCCAACGCCGACGACTGCTTTTCCGATCAGTTCCCGGCGAGTTTTGGGCTTCCATGGCTGTTCAACAATGCCGCCACAGCCGCTAGCGGCATTTAA 996 51.41 MKMEVDWDLHAVVRGYSAAPSVAATAAVPSSDFYSVSSNSNNSVPFAFGRDLTNQTNHLVSLQVQDPFDGSNCNSSEELHELFKPFFPKSQPSPPPPAPPLLSSPPAKILSHQKQQQTAHLLKHIHSTSVSAPRSKRRKNQLKKVCQVPAESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCMARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGSTRQKPITPPPAAAGSGSENPDPKQHVCSSEDQSTITESKEEEKEELLVEDEEDDDLGVSDLIVNDDFYVGFEELDSPNADDCFSDQFPASFGLPWLFNNAATAASGI 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2242871 2244675 + Tan0003992.1 Tan10g0253 765047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0253 331 MobiDBLite consensus disorder prediction 212 227 - -
Tan10g0253 331 MobiDBLite consensus disorder prediction 85 106 - -
Tan10g0253 331 SUPERFAMILY WRKY DNA-binding domain 152 215 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan10g0253 331 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 7 273 IPR044810 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)
Tan10g0253 331 SMART WRKY_cls 154 214 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan10g0253 331 ProSiteProfiles WRKY domain profile. 149 215 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan10g0253 331 MobiDBLite consensus disorder prediction 88 104 - -
Tan10g0253 331 FunFam WRKY transcription factor 22 138 208 - -
Tan10g0253 331 Gene3D WRKY domain 138 208 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan10g0253 331 Pfam WRKY DNA -binding domain 156 213 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Tan10g0253 331 MobiDBLite consensus disorder prediction 209 277 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g1151 Tan-Chr1:11344101 Tan10g0253 Tan-Chr10:2242871 8.20E-39 dispersed
Tan03g2814 Tan-Chr3:81078287 Tan10g0253 Tan-Chr10:2242871 8.00E-37 dispersed
Tan07g0391 Tan-Chr7:7693125 Tan10g0253 Tan-Chr10:2242871 1.10E-37 dispersed
Tan09g1752 Tan-Chr9:69067801 Tan10g0253 Tan-Chr10:2242871 1.10E-25 dispersed
Tan10g0253 Tan-Chr10:2242871 Tan02g0079 Tan-Chr2:933675 4.10E-16 dispersed
Tan10g0253 Tan-Chr10:2242871 Tan05g2751 Tan-Chr5:79553658 2.90E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28478 PF03106 WRKY 4.40E-25 CL0274 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0253 K13425 - csv:101217082 437.958