Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan10g0253 | ATGAAAATGGAAGTTGATTGGGATCTTCACGCCGTCGTCAGAGGCTACTCCGCTGCGCCGTCCGTCGCTGCAACCGCCGCCGTTCCCTCTTCTGACTTTTACTCTGTTTCTTCCAATTCCAATAACTCTGTTCCTTTTGCTTTTGGTAGAGACCTAACGAACCAAACAAACCATTTAGTCTCTCTTCAAGTTCAAGATCCATTTGATGGGTCGAATTGTAATTCTTCTGAGGAATTGCATGAGCTTTTCAAACCATTTTTCCCCAAATCTCAACCCTCTCCGCCGCCGCCTGCTCCACCGCTTCTTTCTTCTCCGCCGGCGAAGATTCTGTCCCATCAGAAGCAGCAACAGACCGCCCATCTTCTTAAACATATTCATTCGACCTCTGTTTCTGCTCCAAGATCCAAACGCCGGAAGAATCAGTTGAAGAAAGTCTGTCAAGTTCCGGCGGAGTCTCTGTCTTCTGACATTTGGGCTTGGCGAAAATATGGACAAAAACCCATCAAGGGATCTCCATATCCAAGGGGATATTACAGATGTAGCAGTTCAAAGGGTTGCATGGCCCGGAAACAAGTGGAGAGGAACAGATCCGACCCGGGAATGTTCATCGTCACTTACACGGCGGAACACAACCACCCGGCGCCGACTCATCGGAATTCCCTCGCCGGCTCCACCCGCCAGAAGCCCATAACGCCGCCTCCCGCCGCCGCAGGATCCGGATCCGAAAACCCCGACCCGAAGCAGCACGTTTGCTCGTCGGAAGACCAGAGTACGATCACGGAGAGCAAAGAAGAAGAGAAAGAGGAATTATTAGTCGAAGACGAAGAAGACGACGATCTGGGGGTCTCCGATTTGATCGTCAACGACGATTTCTACGTGGGTTTTGAAGAACTCGACAGTCCCAACGCCGACGACTGCTTTTCCGATCAGTTCCCGGCGAGTTTTGGGCTTCCATGGCTGTTCAACAATGCCGCCACAGCCGCTAGCGGCATTTAA | 996 | 51.41 | MKMEVDWDLHAVVRGYSAAPSVAATAAVPSSDFYSVSSNSNNSVPFAFGRDLTNQTNHLVSLQVQDPFDGSNCNSSEELHELFKPFFPKSQPSPPPPAPPLLSSPPAKILSHQKQQQTAHLLKHIHSTSVSAPRSKRRKNQLKKVCQVPAESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCMARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGSTRQKPITPPPAAAGSGSENPDPKQHVCSSEDQSTITESKEEEKEELLVEDEEDDDLGVSDLIVNDDFYVGFEELDSPNADDCFSDQFPASFGLPWLFNNAATAASGI | 331 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 2242871 | 2244675 | + | Tan0003992.1 | Tan10g0253 | 765047 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan10g0253 | 331 | MobiDBLite | consensus disorder prediction | 212 | 227 | - | - | |
Tan10g0253 | 331 | MobiDBLite | consensus disorder prediction | 85 | 106 | - | - | |
Tan10g0253 | 331 | SUPERFAMILY | WRKY DNA-binding domain | 152 | 215 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan10g0253 | 331 | PANTHER | WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED | 7 | 273 | IPR044810 | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER) | |
Tan10g0253 | 331 | SMART | WRKY_cls | 154 | 214 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan10g0253 | 331 | ProSiteProfiles | WRKY domain profile. | 149 | 215 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan10g0253 | 331 | MobiDBLite | consensus disorder prediction | 88 | 104 | - | - | |
Tan10g0253 | 331 | FunFam | WRKY transcription factor 22 | 138 | 208 | - | - | |
Tan10g0253 | 331 | Gene3D | WRKY domain | 138 | 208 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan10g0253 | 331 | Pfam | WRKY DNA -binding domain | 156 | 213 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Tan10g0253 | 331 | MobiDBLite | consensus disorder prediction | 209 | 277 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan01g1151 | Tan-Chr1:11344101 | Tan10g0253 | Tan-Chr10:2242871 | 8.20E-39 | dispersed | |
Tan03g2814 | Tan-Chr3:81078287 | Tan10g0253 | Tan-Chr10:2242871 | 8.00E-37 | dispersed | |
Tan07g0391 | Tan-Chr7:7693125 | Tan10g0253 | Tan-Chr10:2242871 | 1.10E-37 | dispersed | |
Tan09g1752 | Tan-Chr9:69067801 | Tan10g0253 | Tan-Chr10:2242871 | 1.10E-25 | dispersed | |
Tan10g0253 | Tan-Chr10:2242871 | Tan02g0079 | Tan-Chr2:933675 | 4.10E-16 | dispersed | |
Tan10g0253 | Tan-Chr10:2242871 | Tan05g2751 | Tan-Chr5:79553658 | 2.90E-38 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
28478 | PF03106 | WRKY | 4.40E-25 | CL0274 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan10g0253 | K13425 | - | csv:101217082 | 437.958 |