Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0284 ATGAGTTTTCGGCTAAGATTCGACTGTAGTGGCGGCGACGGTGGCGGTCTTATGGCCTCCGGTGCAATTGCTCACCCACGCCTTGTTACTCAGTCTTCTTTCCCCAAATCCATGTTCTCTTCTCCTAGACTCTCTCTCGCTCTCGCGAATATCGATGGGCGCGGCGCCGGCGAGATGATACCGGAGGACGGTGGTTTTGAGGTGAATGTTAGGCGGAGGAGTAGAGAGGAAGAGCCGGCGGAGAGCAGATCCGGCAGTGGTGGCGGCTCCGGCGACGATCTCGACGCCGCTTCCGATAACCCTAGGAAGAAGAAACGGTACCACCGTCACACTCCTCAGCAAATCCAAGAACTCGAAGCTATGTTCAAGGAGTGTCCTCATCCCGATGAAAAACAGCGATTGGAGCTCAGTCGAAGACTCTCTTTAGAAACAAAACAAGTCAAATTCTGGTTTCAAAATCGCCGAACTCAAATGAAGACTCAATTAGAACGCCACGAAAACTCATTACTAAGACAAGAGAACGACAAGCTCCGAGCAGAGAACATGGCGATTCGTGAAGCGATGAGGAATCCAATCTGCTCAAACTGCGGCGGAGCGGCCATAATCGGAGAAATCTCTGTGGAAGAACAGCAGCTCCGAATCGAAAACGCTCGATTGAAGGAGGAACTAGAGCGGGTGTGTGTCCTAGCCGGGAAGTTCCTGGGAAGGGGGGTTCCGGTGTCGCCGGCGAGCTCGTGCCTGGAGCTGGGAGTGGGGAGCAATAATAATAATAATAATGTGGAGGAATTTGGAGGGATAATGATGGAGAGATCTGTGTATCTGGAAATGGCGTTGGCGGCCATGGATGAGCTTGTGAAAATGGCGAATAGTGAAGAACCATTGTGGTTTAGAGAGAAGTTGAATGAAGATGAATATTTGAGAAGTTTCAATGGCGGCTGCGTTGGGATTAAGCCAAATGGGTTTGTTTCTGAAGCTTCCAGAGAAACTGGAATCGTCATCGTCAACAGTTCTGCTCTCGTTGAGACTTTAATGGACTCTAACCGGTGGGTGGAGATGTTTCCGAATTTGATTGCGACGGCCGCCACCACCGATGTCATCGCCGGCGGAATGGGAGGAACCAGAAACGGCGCTCTCCAACTGATGCATGCGGAGCTCCAAATTCTGTCTCCCATGGTTCCGGTGAGGCAATTAAGCTTCCTCCGCTTCTGCAAGCAGCATGCCGAGGGTGTTTGGGCGGTCGTCGACGTCTCGATCGATGCCATTACTGAAACTTCCTCTCCGCCGTGCCGGAGACTCCCCTCCGGCTGCGTCATTCACGACATGCCCAATGGCTACTCCAAGGTTACTTGGGTTGAACATTCACAATATGATCAAAGCCACATCCACGAACTGTACCGTCCCTTGGTTGGCTCGGGGCTCGGCTTTGGCGCCCGCCGGTGGATCGCCACCCTCCAACGGCAATGCGAGTGCCTTGCCATCCTCATCTCCACTCCATCCGATCATTCTGGGATTTCCGCGAGTGGACGGCGGAGCATGGTGAAGCTGGCACAGCGGATGACGGCGAACTTCTGCGCCGGAGTATGTGCGTCGACGGTGTACAAATGGAACAAGCTGAACACCGGGAATAAAGTTGGGGAGGATGTGAGAGTGATGACGAGGAAGAGCGTGGACGATCCCGGGGAGCCGCCGGGGACGGTGCTGAGTGCGGCGACATCGGTGTGGCTGCCGGCGGCGGCGGAGAAAGTGTTTGAATTTCTAGGTGATGAGAGGCTGAGGAGCGAATGGGACATTCTGTCGAACGGCGGGCCAATGCAGGAAATGCTTCATATCCCCAAAGCGCAACACCATGCCAATTCCGTCTCTCTCCTCCGCGCCTCCTCTCTAAATCCAAACCAGAATAGCATGTTAATTCTGCAAGAGACTTGCACTGATCCATCGGGGTCGCTTGTGGTGTACGCGCCGGTGGATATTCCGGCGATGCAGGTGGTGATGAACGGCGGCGACTCGGCGTACGTGGCATTGCTGCCGTCGGGGTTCGCGGTGGTGCCGGCGGGGGAGGGCGGTGGCGGAGGGAGTCTGTTGACGGTGGCGTTTCAGATATTGGTGAACAGTTTGCCGACGGATAAACTGACGGTGGAGTCGGTGGAGACGGTGAATAATTTGATATCGTGTACGGTGAAAAAAATTAAAGCGGCTCTCCGGTGTCACGAGACTTGCACGTGA 2223 54.3 MSFRLRFDCSGGDGGGLMASGAIAHPRLVTQSSFPKSMFSSPRLSLALANIDGRGAGEMIPEDGGFEVNVRRRSREEEPAESRSGSGGGSGDDLDAASDNPRKKKRYHRHTPQQIQELEAMFKECPHPDEKQRLELSRRLSLETKQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMAIREAMRNPICSNCGGAAIIGEISVEEQQLRIENARLKEELERVCVLAGKFLGRGVPVSPASSCLELGVGSNNNNNNVEEFGGIMMERSVYLEMALAAMDELVKMANSEEPLWFREKLNEDEYLRSFNGGCVGIKPNGFVSEASRETGIVIVNSSALVETLMDSNRWVEMFPNLIATAATTDVIAGGMGGTRNGALQLMHAELQILSPMVPVRQLSFLRFCKQHAEGVWAVVDVSIDAITETSSPPCRRLPSGCVIHDMPNGYSKVTWVEHSQYDQSHIHELYRPLVGSGLGFGARRWIATLQRQCECLAILISTPSDHSGISASGRRSMVKLAQRMTANFCAGVCASTVYKWNKLNTGNKVGEDVRVMTRKSVDDPGEPPGTVLSAATSVWLPAAAEKVFEFLGDERLRSEWDILSNGGPMQEMLHIPKAQHHANSVSLLRASSLNPNQNSMLILQETCTDPSGSLVVYAPVDIPAMQVVMNGGDSAYVALLPSGFAVVPAGEGGGGGSLLTVAFQILVNSLPTDKLTVESVETVNNLISCTVKKIKAALRCHETCT 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2429494 2435013 - Tan0016125.1 Tan10g0284 765078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0284 740 Coils Coil 155 190 - -
Tan10g0284 740 CDD START_ArGLABRA2_like 270 489 - -
Tan10g0284 740 ProSiteProfiles START domain profile. 266 493 IPR002913 GO:0008289(InterPro)
Tan10g0284 740 SUPERFAMILY Bet v1-like 515 730 - -
Tan10g0284 740 MobiDBLite consensus disorder prediction 55 111 - -
Tan10g0284 740 Pfam START domain 276 490 IPR002913 GO:0008289(InterPro)
Tan10g0284 740 Coils Coil 202 222 - -
Tan10g0284 740 SMART START_1 275 490 IPR002913 GO:0008289(InterPro)
Tan10g0284 740 FunFam Homeobox-leucine zipper protein GLABRA 2 275 489 - -
Tan10g0284 740 SMART HOX_1 102 165 IPR001356 GO:0003677(InterPro)
Tan10g0284 740 ProSiteProfiles 'Homeobox' domain profile. 101 161 IPR001356 GO:0003677(InterPro)
Tan10g0284 740 ProSitePatterns 'Homeobox' domain signature. 136 159 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Tan10g0284 740 FunFam Homeobox-leucine zipper protein HDG1 90 177 - -
Tan10g0284 740 Pfam Homeodomain 104 159 IPR001356 GO:0003677(InterPro)
Tan10g0284 740 SUPERFAMILY Bet v1-like 268 490 - -
Tan10g0284 740 Gene3D - 92 177 - -
Tan10g0284 740 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 90 735 IPR042160 -
Tan10g0284 740 CDD homeodomain 104 161 IPR001356 GO:0003677(InterPro)
Tan10g0284 740 MobiDBLite consensus disorder prediction 65 82 - -
Tan10g0284 740 SUPERFAMILY Homeodomain-like 86 161 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g2109 Tan-Chr6:69929122 Tan10g0284 Tan-Chr10:2429494 8.40E-284 dispersed
Tan07g2005 Tan-Chr7:71725670 Tan10g0284 Tan-Chr10:2429494 5.60E-152 dispersed
Tan10g0284 Tan-Chr10:2429494 Tan10g0285 Tan-Chr10:2431470 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28484 PF01852 START 9.40E-51 CL0209 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0284 K09338 - csv:101222248 992.645