Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0285 ATGAGTTTTCGGCTAAGATTCGACTGTAGTGGCGGCGACGGTGGCGGTCTTATGGCCTCCGGTGCAATTGCTCACCCACGCCTTGTTACTCAGTCTTCTTTCCCCAAATCCATGTTCTCTTCTCCTAGACTCTCTCTCGCTCTCGCGAATATCGATGGGCGCGGCGCCGGCGAGATGATACCGGAGGACGGTGGTTTTGAGGTGAATGTTAGGCGGAGGAGTAGAGAGGAAGAGCCGGCGGAGAGCAGATCCGGCAGTGGTGGCGGCTCCGGCGACGATCTCGACGCCGCTTCCGATAACCCTAGGAAGAAGAAACGGTACCACCGTCACACTCCTCAGCAAATCCAAGAACTCGAAGCTATGTTCAAGGAGTGTCCTCATCCCGATGAAAAACAGCGATTGGAGCTCAGTCGAAGACTCTCTTTAGAAACAAAACAAGTCAAATTCTGGTTTCAAAATCGCCGAACTCAAATGAAGACTCAATTAGAACGCCACGAAAACTCATTACTAAGACAAGAGAACGACAAGCTCCGAGCAGAGAACATGGCGATTCGTGAAGCGATGAGGAATCCAATCTGCTCAAACTGCGGCGGAGCGGCCATAATCGGAGAAATCTCTGTGGAAGAACAGCAGCTCCGAATCGAAAACGCTCGATTGAAGGAGGAACTAGAGCGGGTGTGTGTCCTAGCCGGGAAGTTCCTGGGAAGGGGGGTTCCGGTGTCGCCGGCGAGCTCGTGCCTGGAGCTGGGAGTGGGGAGCAATAATAATAATAATAATGTGGAGGAATTTGGAGGGATAATGATGGAGAGATCTGTGTATCTGGAAATGGCGTTGGCGGCCATGGATGAGCTTGTGAAAATGGCGAATAGTGAAGAACCATTGTGGTTTAGAGAGAAGTTGAATGAAGATGAATATTTGAGAAGTTTCAATGGCGGCTGCGTTGGGATTAAGCCAAATGGGTTTGTTTCTGAAGCTTCCAGAGAAACTGGAATCGTCATCGTCAACAGTTCTGCTCTCGTTGAGACTTTAATGGACTCTAACCGGTGGGTGGAGATGTTTCCGAATTTGATTGCGACGGCCGCCACCACCGATGTCATCGCCGGCGGAATGGGAGGAACCAGAAACGGCGCTCTCCAACTGATGCATGCGGAGCTCCAAATTCTGTCTCCCATGGTTCCGGTGAGGCAATTAAGCTTCCTCCGCTTCTGCAAGCAGCATGCCGAGGGTGTTTGGGCGGTCGTCGACGTCTCGATCGATGCCATTACTGAAACTTCCTCTCCGCCGTGCCGGAGACTCCCCTCCGGCTGCGTCATTCACGACATGCCCAATGGCTACTCCAAGGTTACTTGGGTTGAACATTCACAATATGATCAAAGCCACATCCACGAACTGTACCGTCCCTTGGTTGGCTCGGGGCTCGGCTTTGGCGCCCGCCGGTGGATCGCCACCCTCCAACGGCAATGCGAGTGCCTTGCCATCCTCATCTCCACTCCATCCGATCATTCTGGGATTTCCGCGAGTGGACGGCGGAGCATGGTGAAGCTGGCACAGCGGATGACGGCGAACTTCTGCGCCGGAGTATGTGCGTCGACGGTGTACAAATGGAACAAGCTGAACACCGGGAATAAAGTTGGGGAGGATGTGAGAGTGATGACGAGGAAGAGCGTGGACGATCCCGGGGAGCCGCCGGGGACGGTGCTGAGTGCGGCGACATCGGTGTGGCTGCCGGCGGCGGCGGAGAAAGTGTTTGAATTTCTAGGTGATGAGAGGCTGAGGAGCGAATGGGACATTCTGTCGAACGGCGGGCCAATGCAGGAAATGCTTCATATCCCCAAAGCGCAACACCATGCCAATTCCGTCTCTCTCCTCCGCGCCTCCGTACTTTCTCTCTCCTCTCTTTAA 1902 53.84 MSFRLRFDCSGGDGGGLMASGAIAHPRLVTQSSFPKSMFSSPRLSLALANIDGRGAGEMIPEDGGFEVNVRRRSREEEPAESRSGSGGGSGDDLDAASDNPRKKKRYHRHTPQQIQELEAMFKECPHPDEKQRLELSRRLSLETKQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMAIREAMRNPICSNCGGAAIIGEISVEEQQLRIENARLKEELERVCVLAGKFLGRGVPVSPASSCLELGVGSNNNNNNVEEFGGIMMERSVYLEMALAAMDELVKMANSEEPLWFREKLNEDEYLRSFNGGCVGIKPNGFVSEASRETGIVIVNSSALVETLMDSNRWVEMFPNLIATAATTDVIAGGMGGTRNGALQLMHAELQILSPMVPVRQLSFLRFCKQHAEGVWAVVDVSIDAITETSSPPCRRLPSGCVIHDMPNGYSKVTWVEHSQYDQSHIHELYRPLVGSGLGFGARRWIATLQRQCECLAILISTPSDHSGISASGRRSMVKLAQRMTANFCAGVCASTVYKWNKLNTGNKVGEDVRVMTRKSVDDPGEPPGTVLSAATSVWLPAAAEKVFEFLGDERLRSEWDILSNGGPMQEMLHIPKAQHHANSVSLLRASVLSLSSL 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2431470 2435013 - Tan0016125.2 Tan10g0285 765079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0285 633 SUPERFAMILY Bet v1-like 508 598 - -
Tan10g0285 633 Coils Coil 155 190 - -
Tan10g0285 633 Pfam START domain 276 490 IPR002913 GO:0008289(InterPro)
Tan10g0285 633 CDD START_ArGLABRA2_like 270 489 - -
Tan10g0285 633 ProSiteProfiles START domain profile. 266 493 IPR002913 GO:0008289(InterPro)
Tan10g0285 633 Gene3D - 92 177 - -
Tan10g0285 633 MobiDBLite consensus disorder prediction 55 111 - -
Tan10g0285 633 SUPERFAMILY Homeodomain-like 86 161 IPR009057 -
Tan10g0285 633 Coils Coil 202 222 - -
Tan10g0285 633 SMART START_1 275 490 IPR002913 GO:0008289(InterPro)
Tan10g0285 633 SMART HOX_1 102 165 IPR001356 GO:0003677(InterPro)
Tan10g0285 633 FunFam Homeobox-leucine zipper protein GLABRA 2 275 489 - -
Tan10g0285 633 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 90 626 IPR042160 -
Tan10g0285 633 Pfam Homeodomain 104 159 IPR001356 GO:0003677(InterPro)
Tan10g0285 633 ProSiteProfiles 'Homeobox' domain profile. 101 161 IPR001356 GO:0003677(InterPro)
Tan10g0285 633 SUPERFAMILY Bet v1-like 268 490 - -
Tan10g0285 633 ProSitePatterns 'Homeobox' domain signature. 136 159 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Tan10g0285 633 FunFam Homeobox-leucine zipper protein HDG1 90 177 - -
Tan10g0285 633 CDD homeodomain 104 161 IPR001356 GO:0003677(InterPro)
Tan10g0285 633 MobiDBLite consensus disorder prediction 65 82 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g0284 Tan-Chr10:2429494 Tan10g0285 Tan-Chr10:2431470 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28485 PF01852 START 6.90E-51 CL0209 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0285 K09338 - csv:101222248 829.32