Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0311 ATGGTGAGAGGAAAAACTCAGATGAGGCGAATCGAGAACGCGACGAGTCGGCAAGTTACGTTTTCGAAACGGCGTAATGGGTTGCTGAAGAAGGCGTTTGAACTCTCCGTTCTTTGTGAAGCTGAAGTTGCTCTTATCATTTTCTCTTCTAGAGGGAAGCTTTATGAATTTGCTAGCTCAAGCATGCAGGCCACGGTGGGGCGATTTCTAAGGCATACAAGAGAAACCCATCATCTTGAACGTCCTTTATCTCATCATCACATTCTACAAGCTGTTCAGCATGAGGCTGCAAGTTTGTTGAAGGAGATTGAGTCACTTGAAGTTTCAAAGAGGAAATTGTTGGGAGAAGGTTTGGAATCAAGCTCCTATGAAGAACTTCAACAAATAGAACAACAGATAGAAAGGAGCTTAGCCCATATTAGAGCTAGAAAGCACGAGGTTTACAAGGAACAGATTGAACAACTAAAAGAAAAGGAGAAGTATTTGACAGCTGAAAATGCAAAGCTAGGTAAAAAGTACTTGATTCAACTTGAGCCTCAACAATCACCGACCCAATTAGAAAATGTTTCACCAAATCTTGAAACCAGCTCGATTTCTGATGTCGAAACGGGTTTGTTCATTGGACCGCCCAGGTCGAGATCTAAGTGA 648 42.28 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCEAEVALIIFSSRGKLYEFASSSMQATVGRFLRHTRETHHLERPLSHHHILQAVQHEAASLLKEIESLEVSKRKLLGEGLESSSYEELQQIEQQIERSLAHIRARKHEVYKEQIEQLKEKEKYLTAENAKLGKKYLIQLEPQQSPTQLENVSPNLETSSISDVETGLFIGPPRSRSK 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2588016 2593931 + Tan0003775.1 Tan10g0311 765105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0311 215 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan10g0311 215 Coils Coil 89 116 - -
Tan10g0311 215 Coils Coil 123 143 - -
Tan10g0311 215 Coils Coil 145 172 - -
Tan10g0311 215 SUPERFAMILY SRF-like 3 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan10g0311 215 Gene3D - 14 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan10g0311 215 Pfam K-box region 85 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Tan10g0311 215 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan10g0311 215 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan10g0311 215 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan10g0311 215 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Tan10g0311 215 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan10g0311 215 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan10g0311 215 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Tan10g0311 215 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 181 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Tan10g0311 215 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Tan10g0311 215 ProSiteProfiles K-box domain profile. 89 183 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g2139 Tan-Chr6:70836650 Tan10g0311 Tan-Chr10:2588016 2.60E-59 dispersed
Tan06g2140 Tan-Chr6:70836650 Tan10g0311 Tan-Chr10:2588016 2.60E-59 dispersed
Tan07g0249 Tan-Chr7:5370438 Tan10g0311 Tan-Chr10:2588016 6.20E-42 dispersed
Tan10g0311 Tan-Chr10:2588016 Tan10g0313 Tan-Chr10:2588016 9.30E-86 dispersed
Tan10g0311 Tan-Chr10:2588016 Tan10g0312 Tan-Chr10:2588016 8.30E-111 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28487 PF01486 K-box 3.50E-25 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0311 - - - 0.0