Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0346 ATGGATCGAGCCGCCGCCGCCCACGGCCGTCAACTTCCGCCGCCGTTCATTTCAAGAGACCTCCATCACAATCCCCACCACCTTTTCCTCCACCAAAACACCGATCAACAACACAGCGGAAATGGCATCTCCGGCGGCGGCGGCGCCGTGGAATCCAAAGAGGTAAGCGGGGGCGCCGCCGCAGACGGCGAGGTCTCGAGACGGCCACGTGGTCGCCCCTCCGGGTCGAAGAACAAGCCGAAGCCACCGATGATAATCACACGCGACAGCGCCAATGCACTCCGGTGCCACGTCATCGAAATCGCCAACGCCAACGACGTGATCGAAACCCTCACGGTTTTCGCACGTCAGCGCCAGCGTGGCATTTGCATTCTTACCGGCGCCGGAGCGGTCACCAACGTCATCCTCAAGCAGCCGGCTGCCTCCACCGCCGGAGCGGTGATCTCCCTGCCGGGGAGATTCGAGATTCTGTCGCTGTCGGGATCGTTTCTTCCGCCGCCTGCGCCCCCGGCAGCGTCCGGGCTGACCGTGTATTTGTCGGGCGGGCAGGGGCAGGTGGTCGGAGGAAGCGTGGTGGGCCCACTTTTAAGTTCGGGACCGGTGGTAATTACGGCCGCTTCGTTCGGAAACGCAGCGTACGAGAGGCTGCCGGTAGAGGACGATGATGGGGCGGGGGCGACAGCGGCGGAAGCCGGAAATAGTCCGATTAGGTCGCCGGAAACCGCCGTGCAACAGCAACAATTTTTGCCGGAACTTCATGGAATGGCGCCCAATCTAATGAACACGTGTCAATTGCCGACGGAACCCTACTGGGGCACAGGTCGTACTTCGCCATTTTAG 840 62.02 MDRAAAAHGRQLPPPFISRDLHHNPHHLFLHQNTDQQHSGNGISGGGGAVESKEVSGGAAADGEVSRRPRGRPSGSKNKPKPPMIITRDSANALRCHVIEIANANDVIETLTVFARQRQRGICILTGAGAVTNVILKQPAASTAGAVISLPGRFEILSLSGSFLPPPAPPAASGLTVYLSGGQGQVVGGSVVGPLLSSGPVVITAASFGNAAYERLPVEDDDGAGATAAEAGNSPIRSPETAVQQQQFLPELHGMAPNLMNTCQLPTEPYWGTGRTSPF 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2803196 2804451 - Tan0011633.1 Tan10g0346 765140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0346 279 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 51 240 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Tan10g0346 279 CDD DUF296 95 164 IPR005175 -
Tan10g0346 279 FunFam AT-hook motif nuclear-localized protein 94 223 - -
Tan10g0346 279 MobiDBLite consensus disorder prediction 1 22 - -
Tan10g0346 279 Gene3D - 94 224 - -
Tan10g0346 279 ProSiteProfiles PPC domain profile profile. 91 230 IPR005175 -
Tan10g0346 279 SUPERFAMILY AF0104/ALDC/Ptd012-like 91 220 - -
Tan10g0346 279 MobiDBLite consensus disorder prediction 34 85 - -
Tan10g0346 279 Pfam Plants and Prokaryotes Conserved (PCC) domain 95 208 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan07g1754 Tan-Chr7:69092337 Tan10g0346 Tan-Chr10:2803196 3.40E-65 dispersed
Tan10g0346 Tan-Chr10:2803196 Tan10g0419 Tan-Chr10:3375213 1.30E-55 dispersed
Tan10g0346 Tan-Chr10:2803196 Tan10g0352 Tan-Chr10:2874910 5.90E-16 proximal
Tan10g0346 Tan-Chr10:2803196 Tan06g2152 Tan-Chr6:71260477 5.20E-73 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0346 - - - 0.0