Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0350 ATGAGCTCGAGGCGCAGTGGTGGAGGTTGCACGGGAGGCAATGGTGGCAGCGGACCGTGTGGGGCGTGCAAGTTTCTGCGGAGGAAGTGTCTGCCTGGGTGTATATTTGCACCCTACTTCGACTCCGAACAAGGCACAGCTCATTTTGCGGCAGTGCACAAGGTGTTCGGAGCGAGCAACGTGTCGAAGCTGCTTCTACATATTCCTGAACACAAGCGTCTTGACGCCGCTATAACTATATGCTACGAGGCACAAGCTCGAGTTAGAGAGCCTGTTTTTGGCTGTGTTGCTCATATCTTTGCTCTTCAACAACAGGCTGCGAGGTTGCGAGCAGAGCTCTCATACTTACAAGCATACCTAGCAACATCTGAGCTTCCAAGACCCGCACCCCATCCGCAGGCACAGCCATCAGCTCTGATCAAGCCATCTATACCCTCAATTGTAAACCTTCCATCTGCTTGCCCTTCTTCGCCCGCAGTGTCAGATCTTTCGCTACTGCTCGATCCCGTGGAGCAAGCTTCAGGGGCAAAATTGCTGTCTCCATTGGAACTGTATGAAATTGGAAGCAACAATTTCCCATCCATGGATGGCAGGGATCAACAACTTGTCCAAAAACAACTGTCCTCAATGCAATGCATTGGTGCCTCGCTATTTCCATACCTCGCTAAACGAGCCTAA 678 51.47 MSSRRSGGGCTGGNGGSGPCGACKFLRRKCLPGCIFAPYFDSEQGTAHFAAVHKVFGASNVSKLLLHIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLRAELSYLQAYLATSELPRPAPHPQAQPSALIKPSIPSIVNLPSACPSSPAVSDLSLLLDPVEQASGAKLLSPLELYEIGSNNFPSMDGRDQQLVQKQLSSMQCIGASLFPYLAKRA 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2839583 2840394 - Tan0003650.1 Tan10g0350 765144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0350 225 ProSiteProfiles LOB domain profile. 18 120 IPR004883 -
Tan10g0350 225 PANTHER LOB DOMAIN CONTAINING PROTEIN 16 138 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Tan10g0350 225 Pfam Lateral organ boundaries (LOB) domain 19 117 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g2155 Tan-Chr6:71371337 Tan10g0350 Tan-Chr10:2839583 2.60E-41 dispersed
Tan10g0350 Tan-Chr10:2839583 Tan10g1658 Tan-Chr10:34729835 3.70E-37 dispersed
Tan10g0350 Tan-Chr10:2839583 Tan06g2154 Tan-Chr6:71327896 5.00E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28496 PF03195 LOB 3.80E-36 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0350 K21994 - csv:101216934 337.421