Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0352 ATGGAAGAGAGAGAGGCTATAAGTTCAGGAGTAACAGTAATAGGAGCCGAAGCTCCGTCGGCTTACCACGTGGCTCCGAGAACCGATAACCCGACGCCGGCCACTGGCGGCGGTTCACCCGCCGTCGCCGCCTCGCCGGTCAGCGTGGGGCTACCAGGAAGTGGAACCACAGGGAAAAAGAAGCGGGGAAGACCTAGGAAATACGGCCCGGATGGATCGGTCACCATGGCATTGTCGCCATTGCCGCTTTCTTCCTCAGCTCCGGCGGCCGGCGGGTTCTCCATCACCAAGCGGGGGAAGGGCCGGCTCGGCGGCTCTGAGTTCAAGCATCACAAGAAAATGGGAATGGAATATATAGGCGAATGGAATGCGTGTTCTGTCGGTACAAATTTCATGCCTCATATCATCACGGTTAATGCTGGCGAGGATGTCACTATGAAGATCATATCATTTTCTCAACAAGGTCCTCGAGCAATCTGCATTCTTTCTGCGAATGGTGTAATTTCCAATGTCACTCTTCGGCAGCCTGATTCTTCGGGCGGTACTTTAACGTATGAGGGTCGTTTTGAGATACTTTCATTGTCTGGATCATTCATGCCTACTGAAAATCAAGGAACGAGAAGCAGGTCGGGTGGGATGAGCGTCTCCTTGGCAAGCCCCGATGGTCGTGTTGTTGGGGGTGGGGTGGCTGGTTTACTCATAGCTGCAAGCCCTGTACAGGTTGTGGTAGGGAGTTTTCTACCAACTAGCCAACAGGAGCAGAAAGTAAAGAAACAAAAGCCCGAGTCGGTACCAGCTGCAGCTCCTGTTGCAGTCCCGAGCACAGCACCAGCCACCACCGTGCCAACTTCCAATGCCGATATAGATGACAATTTAAATGGTAACGGTCTGCAAAATCCTGGATCCCTTAAACCAACTACTTTCGCTCCTGCTGCTTTCCAGAGAGAGAATTGGGGCGCCAACGCTGCTGTGCATTCCTTGCAGGAGCCGAGAAATACCGCTACCAACATCAATATATCGCTGCCAGGCTAA 1032 52.81 MEEREAISSGVTVIGAEAPSAYHVAPRTDNPTPATGGGSPAVAASPVSVGLPGSGTTGKKKRGRPRKYGPDGSVTMALSPLPLSSSAPAAGGFSITKRGKGRLGGSEFKHHKKMGMEYIGEWNACSVGTNFMPHIITVNAGEDVTMKIISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTENQGTRSRSGGMSVSLASPDGRVVGGGVAGLLIAASPVQVVVGSFLPTSQQEQKVKKQKPESVPAAAPVAVPSTAPATTVPTSNADIDDNLNGNGLQNPGSLKPTTFAPAAFQRENWGANAAVHSLQEPRNTATNINISLPG 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2874910 2880328 + Tan0022281.1 Tan10g0352 765146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0352 343 ProSiteProfiles PPC domain profile profile. 128 268 IPR005175 -
Tan10g0352 343 Gene3D - 133 262 - -
Tan10g0352 343 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 13 283 IPR039605 GO:0003680(InterPro)
Tan10g0352 343 MobiDBLite consensus disorder prediction 276 301 - -
Tan10g0352 343 CDD DUF296 133 246 IPR005175 -
Tan10g0352 343 MobiDBLite consensus disorder prediction 250 301 - -
Tan10g0352 343 Pfam Plants and Prokaryotes Conserved (PCC) domain 133 246 IPR005175 -
Tan10g0352 343 MobiDBLite consensus disorder prediction 1 73 - -
Tan10g0352 343 FunFam AT-hook motif nuclear-localized protein 1-like 133 263 - -
Tan10g0352 343 SUPERFAMILY AF0104/ALDC/Ptd012-like 131 252 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3427 Tan-Chr1:98340217 Tan10g0352 Tan-Chr10:2874910 2.80E-68 dispersed
Tan07g1659 Tan-Chr7:67954370 Tan10g0352 Tan-Chr10:2874910 1.20E-50 dispersed
Tan07g1762 Tan-Chr7:69191597 Tan10g0352 Tan-Chr10:2874910 1.90E-90 dispersed
Tan07g1763 Tan-Chr7:69191597 Tan10g0352 Tan-Chr10:2874910 3.80E-82 dispersed
Tan07g1968 Tan-Chr7:71451940 Tan10g0352 Tan-Chr10:2874910 7.10E-46 dispersed
Tan08g0383 Tan-Chr8:3461902 Tan10g0352 Tan-Chr10:2874910 7.60E-32 dispersed
Tan10g0352 Tan-Chr10:2874910 Tan10g0419 Tan-Chr10:3375213 1.20E-21 dispersed
Tan10g0346 Tan-Chr10:2803196 Tan10g0352 Tan-Chr10:2874910 5.90E-16 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0352 - - - 0.0