Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0368 ATGGAGGTCGGGAGGTTACCGATCTCCGCCTCGCTGCGAGGTAAACTGATTTCAGCAGGCTACACTACTCTCTCCTCTCTCGCTTCTGTCTCTCCTTCCGACCTTGCTCGAGAACTGGAAATCTCGAACAATGAAGCTTTTGAAATTCTTAAGTTTGCATCACATGGTAGTAGGCTGGACGGGTCAAACGGGAGTGGTGCTATTGTTAACGGTGCAGAGACTGCTTGGGATATGCTCCACAAAGAGCAGTTAGTGCCACGGATTACCACATCTTGTGCAGATTTAGATAACCTTCTTGGTGGAGGAATTAATAGCAGTGAAGTTACGGAAATTGGTGGAGTACCGGGCATAGGTAAAACACAGCTTGGGATTCAACTTGCTGTAAATGTTCAAATTCCAGGTGCATTTGGTGGCTTAGGTGGTAAAGCAGTTTATATAGATACAGAAGGGAGCTTTATGGTAGAGCGTGCTGTGCAGATTGCTGAAGCATGTATAGAAGATATGTCAGATTACAGTGTCTTACTAAAGAAGAATGCAATACCTCATCAAATTCAAATCCAACCAAAAGATATCTTGGAAAACATTTTTTACTTTCGTGTCTGCAGCTATACAGAGCAAATTGCTCTGGTAAATTATCTGGACAAGTTCATTACTGAGCACAAAGATGTTAAGGTTATCATAGTTGATAGTGTGACATTCCATTTCCGCCAAAATTTTGATGACTTGGCGCTCAGGACACGGTTACTCAGTGAAATGGCTCTCAAGTTGATGAAGCTGGCCAAGAAGTTTAGTTTAGCTGTTGTTCTATTTAATCAGGTGACGACGAAATTCACCGAAGGTTCATTCCAATTAACTCTTGCATTGGGTGATAGCTGGTCACACTCTTGCACAAATCGGGTCATTTTATATTGGAACGGCGACGAAAGGTACGCATATCTTGAAAAGTCGCCCTCTCTTCAATCTGCATCGGCACCTTATTCTGTGACTTGTAGAGGCATTAGAAATTCTACCTCAAGTAATAAGAGAACCAAAATGATGTAA 1041 42.36 MEVGRLPISASLRGKLISAGYTTLSSLASVSPSDLARELEISNNEAFEILKFASHGSRLDGSNGSGAIVNGAETAWDMLHKEQLVPRITTSCADLDNLLGGGINSSEVTEIGGVPGIGKTQLGIQLAVNVQIPGAFGGLGGKAVYIDTEGSFMVERAVQIAEACIEDMSDYSVLLKKNAIPHQIQIQPKDILENIFYFRVCSYTEQIALVNYLDKFITEHKDVKVIIVDSVTFHFRQNFDDLALRTRLLSEMALKLMKLAKKFSLAVVLFNQVTTKFTEGSFQLTLALGDSWSHSCTNRVILYWNGDERYAYLEKSPSLQSASAPYSVTCRGIRNSTSSNKRTKMM 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2996646 3001695 - Tan0001023.1 Tan10g0368 765162

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0368 346 PANTHER DNA REPAIR PROTEIN RAD51 HOMOLOG 3 RAD51C 1 341 IPR052093 GO:0000400(PANTHER)|GO:0000707(PANTHER)|GO:0005657(PANTHER)|GO:0007131(PANTHER)|GO:0008821(PANTHER)|GO:0033063(PANTHER)|GO:0033065(PANTHER)
Tan10g0368 346 FunFam DNA repair protein RAD51 71 337 - -
Tan10g0368 346 SUPERFAMILY Rad51 N-terminal domain-like 6 54 IPR010995 GO:0000166(InterPro)
Tan10g0368 346 PIRSF Rad51 1 339 IPR016467 -
Tan10g0368 346 Gene3D - 68 337 IPR027417 -
Tan10g0368 346 ProSiteProfiles RecA family profile 1. 84 273 IPR020588 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0140664(InterPro)
Tan10g0368 346 CDD Rad51C 107 317 - -
Tan10g0368 346 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 85 334 IPR027417 -
Tan10g0368 346 Gene3D - 13 55 - -
Tan10g0368 346 Pfam Rad51 85 335 IPR013632 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0368 K10870 - - csv:101216284 632.869
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g0838 Tan-Chr8:10270122 Tan10g0368 Tan-Chr10:2996646 4.10E-20 dispersed
Tan10g0368 Tan-Chr10:2996646 Tan10g0370 Tan-Chr10:2996646 2.70E-172 dispersed
Tan10g0367 Tan-Chr10:2995982 Tan10g0368 Tan-Chr10:2996646 8.00E-171 tandem
Tan10g0368 Tan-Chr10:2996646 Tan10g0369 Tan-Chr10:2996646 1.20E-148 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g840 . . . Bda08g00022 . . . Bma05g01275 Cmo08g01008 . . Cma14g01867 Car06g01090 Car14g01671 Sed02g1574 . . Bhi01g00249 Tan10g0368 Cmetu06g0103 . . . . Cla06g00732 Cam06g0782 Cec06g0786 Cco06g0797 Clacu06g0780 Cmu06g0756 Cre06g1533 . . . . Lsi05g01805 Csa02g00984 . Cme06g00415 . . . . Bpe05g01130 . . . Sed02g1466 Cmo06g01277 Cmo14g01913 Cma08g01037 . Car08g00912 . . . Bhi12g01520 Tan06g2330 Cmetu06g0990 Lac12g2087 Hepe03g0336 . Lcy13g0440 Cla05g00377 Cam05g0410 Cec05g0415 . Clacu05g0406 Cmu05g0389 Cre05g0451 Lsi09g01164 Csa03g01134 Chy06g00400 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012434 1 2 0 1 1 0 1 1 1 1 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 4 1 29