Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0388 ATGCCCTTTCTATTTGCAACATTTCTTCTCCTCTTCTTAGCCATCACGGCTTCTTCTATTTCTTCCTTAGACGAGATGAACCCGGTTCGTTTGGCACGGACCGGAATTGAGGAAGCCAGAACCGGAATGGGTAATTTAAAACGACGTCGCTTTGAAAGTCGGAACGTGCAGGTCGCACTTGACGATTGCCATACGCTCTACGCGGAGTCCGACCGGCGGCTCGCCGGGATGTTAGTTGGAGAAAATTACACGGCGGAGGATGCTCGGATGTGGCTCAGCGCCGCTGTGGCTAATCATCGGAGTTGTTTGGATGGCTTGGAAGAGGTTGGCGTTGGCGCTGAAGCGGCGGTGAATGGGAATAACTTGACCGTGTTGCTCACCGGAGCTCTGCATTTATATGACAAAATTGCCGCCGTGGAGCAGTGGAAAGGAGTTGAGGAAGAGAAATTGAGGAAAAACAGGGGAATCAACTTGGCGGAATGGAATCCGGCGACGTCGAAGCCGGACTATGTGGTGGCGATGGACGGCTCCGGCACCCACAAAACCATAAACGGCGCGGTGGCGGCTCTGGGGAGGAGCGGGCGGATACGGCGGTCGGAGAGAGTGGTGATATATGTGAAAGCCGGAGTTTACAAGGAGAATGTGGAAATTGGAATACAATTGAAGAACGTTATGGTTGTTGGCGACGGCGCAGACAAAACCATCGTCACCGGCAGCCGAAACGTGCCGGACGGCGCCACCACTTATAACTCAGCTACATTTGGCGTTTCCGGCGACGGATTCTGGGCAAGAGACATAACGTTCGAGAACACCGCTGGACCAAGAAAGCAACAAGCGGTGGCGTTGCGGTTGAATTCCGACCTCGCTGTCGTTTACCGATGCACAATAAAAGGCTATCAGGACACCCTATTCCTCCACTCCCTCCGGCAATTTTACCGCGACTGCCAAATCTACGGGACGGTCGATTTCATATTCGGCAATGCCGCCGCCGCCATCCAAAACTGCGATATCTTTGTTCGACGGCCGATTCGCCACCAGGCCAATATGATCACCGCTCAAGGCCGCGACGATCCGACCGAGGCCACTGGAATTTTGATCCTCAACTCCAGAGTTCGGCCGGCACCGGATTTCGCCGCGGTTAAGGCCAATTTCAAGACCTACCTCGGCCGCCCCTGGAAGCGATTCTCGAGGACGGTGGTTATGGCGTCAGATCTGGACGAATTGATCGATCCGAGAGGGTGGGGAGAATGGAAGGGGGATTTTGCAATTTCGACTCTGTTTTATGCAGAGTTTAAGAACACTGGTGGTGGTTCTTCTACTAGTTTTAGGGTTAATTGGCCGGGATTTCATGTCCTTCATAGCACAGAGGAGGCGCGCCGTTTCACGGTGGCTGAATTTCTTCACGGCGGCGCTTGGATTCCGACCACCGGAGTGCCATTCAAGGCTGGAGTTTGA 1455 53.81 MPFLFATFLLLFLAITASSISSLDEMNPVRLARTGIEEARTGMGNLKRRRFESRNVQVALDDCHTLYAESDRRLAGMLVGENYTAEDARMWLSAAVANHRSCLDGLEEVGVGAEAAVNGNNLTVLLTGALHLYDKIAAVEQWKGVEEEKLRKNRGINLAEWNPATSKPDYVVAMDGSGTHKTINGAVAALGRSGRIRRSERVVIYVKAGVYKENVEIGIQLKNVMVVGDGADKTIVTGSRNVPDGATTYNSATFGVSGDGFWARDITFENTAGPRKQQAVALRLNSDLAVVYRCTIKGYQDTLFLHSLRQFYRDCQIYGTVDFIFGNAAAAIQNCDIFVRRPIRHQANMITAQGRDDPTEATGILILNSRVRPAPDFAAVKANFKTYLGRPWKRFSRTVVMASDLDELIDPRGWGEWKGDFAISTLFYAEFKNTGGGSSTSFRVNWPGFHVLHSTEEARRFTVAEFLHGGAWIPTTGVPFKAGV 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3042124 3045371 - Tan0019846.1 Tan10g0388 765182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0388 484 PANTHER PECTINESTERASE 36 475 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Tan10g0388 484 Pfam Pectinesterase 170 469 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Tan10g0388 484 SUPERFAMILY Pectin lyase-like 164 482 IPR011050 -
Tan10g0388 484 FunFam Pectinesterase 163 484 - -
Tan10g0388 484 Gene3D - 163 484 IPR012334 -
Tan10g0388 484 SMART PMEI_2 15 132 IPR006501 GO:0004857(InterPro)
Tan10g0388 484 Gene3D Invertase/pectin methylesterase inhibitor family protein 18 136 IPR035513 -
Tan10g0388 484 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 121 IPR035513 -
Tan10g0388 484 ProSitePatterns Pectinesterase signature 2. 317 326 IPR033131 -
Tan10g0388 484 Pfam Plant invertase/pectin methylesterase inhibitor 29 115 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g0388 Tan-Chr10:3042124 Tan11g1757 Tan-Chr11:18067381 3.10E-113 dispersed
Tan10g0388 Tan-Chr10:3042124 Tan10g0389 Tan-Chr10:3069015 1.30E-103 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0388 K01051 - csv:101217635 742.265