Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0389 ATGGCAGCCATTCAAAGCCATTATTCAATCCTTCTTGTTGTTGTTATTGTTCTTGTTTTTCCATACGCCATTTTTGGTTACTCTGAAACTGAAGTAAAAAACTGGTGCAGCCAAACGCCATATCCAGCTCCATGCGAGCATTTTCTCAAATCCAAATCCACAACTAAAAAAAAATCCCCAATCTCCACTAAATCCCACTTCCTCAAAATCCTTGTCAAAACGGCACTCGATCGCGCCGTTTCGGCCCACCAAGCCGCTCTCTCTCTCGGCCCAAAGTGCCGAAACGCCAGAGAAAAATCTGCATGGACCGACTGCATTGACCTCTACGACCAAATTATAACCCGGCTCAACCGGACCGCCGACCCCTGTTCTCCGGTCGACGCCCAGACCTGGCTCAGCGCCGCCCTCACCGCCCTCGACACCTGCCGGACCGGCTTCGAGGAGCTTGGGGTTTCGGCTTTCGGCTACCCTTTGACGGCTAATAATGTTTCCAAGCTCATTAGTGATGGGTTGTCCGTGAATAAGCCCGCGTCGCCGGAGGGGTTTCAGCCGCCGAGCATGGCGGACGGGTTTCCGACGTGGGTGAGTCCCGGTGAAAGGAAATTGCTGCAGTCAGGGGCTCCGAATGCCGACGTGGTGGTGGCGAAGGATGGGTCTGGGAAATTTAAGACGGTGAAGGAGGCGGTCGCCGCCGCGAAGGCCGGAGGGAGATTTGTGATATATGTGAAGGCGGGGGTTTATAGTGAGAATGTTGAGATTAAGGCTAAGAATGTTATGTTGGTCGGAGATGGTATCGGAAAAACTGTCATCACCGGAAGTAGAAGCGTCGGCGGCGGTTCTACCACTTTTAGATCCGCCACCGTTGCCGTTGATGGAGACGGATTCATCGCCCGCGACATAACCTTCAGAAACACCGCCGGAGCATCAAACCACCAGGCGGTGGCGCTCCGGTCGGGCTCCGATCTCTCCGTCTTCTATCGGTGCAGCTTTGAAGGCTATCAAGACACTCTCTATGTCTACGCCGAACGCCAATTCTACAAGCAATGCGACATTTACGGCACCGTCGATTTCATCTTCGGCAACGCCGCCGTCGTAATCCAAGACTGCAACATCATCGCCCGCGATCCTCCGAACAAGACGATCACGCTCACCGCCCAAGGCCGCTCAGATCCGAATCAGAACACCGGAATCTCGATCCACAATTGCAGAGTCACGTCGGCCGGTGGCCTCAGCGGCGTCAAGGCCTATTTAGGCCGGCCGTGGAGGCAGTATTCAAGAACTGTATTCATGAAATCGTCGATCGGAGGATTTATCAGTCCGGCCGGGTGGATGGAGTGGAGCGGTAATTTTGCCCTAAATACTCTGTATTACGGCGAGTATATGAACACCGGTCCGGGAGCTTCGACGGCGAATCGAGTGAAGTGGAAGGGTTATCATGTGATTACCAGTGCGGCGGAGGCTTCGAAGTTCACCGTCGGGAATTTCATCGCCGGTGGATCTTGGTTGCCGAACACCGGCGTTCCTTTCACCTCCGGCCTCTGA 1542 54.22 MAAIQSHYSILLVVVIVLVFPYAIFGYSETEVKNWCSQTPYPAPCEHFLKSKSTTKKKSPISTKSHFLKILVKTALDRAVSAHQAALSLGPKCRNAREKSAWTDCIDLYDQIITRLNRTADPCSPVDAQTWLSAALTALDTCRTGFEELGVSAFGYPLTANNVSKLISDGLSVNKPASPEGFQPPSMADGFPTWVSPGERKLLQSGAPNADVVVAKDGSGKFKTVKEAVAAAKAGGRFVIYVKAGVYSENVEIKAKNVMLVGDGIGKTVITGSRSVGGGSTTFRSATVAVDGDGFIARDITFRNTAGASNHQAVALRSGSDLSVFYRCSFEGYQDTLYVYAERQFYKQCDIYGTVDFIFGNAAVVIQDCNIIARDPPNKTITLTAQGRSDPNQNTGISIHNCRVTSAGGLSGVKAYLGRPWRQYSRTVFMKSSIGGFISPAGWMEWSGNFALNTLYYGEYMNTGPGASTANRVKWKGYHVITSAAEASKFTVGNFIAGGSWLPNTGVPFTSGL 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3069015 3074369 + Tan0017077.1 Tan10g0389 765183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0389 513 CDD PMEI-like_3 35 178 - -
Tan10g0389 513 NCBIfam pectinesterase inhibitor domain 9 153 IPR006501 GO:0004857(InterPro)
Tan10g0389 513 PANTHER PECTINESTERASE 5 504 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Tan10g0389 513 SMART PMEI_2 27 173 IPR006501 GO:0004857(InterPro)
Tan10g0389 513 Gene3D - 206 513 IPR012334 -
Tan10g0389 513 FunFam Pectinesterase 205 513 - -
Tan10g0389 513 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 175 IPR035513 -
Tan10g0389 513 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 174 IPR035513 -
Tan10g0389 513 ProSitePatterns Pectinesterase signature 2. 351 360 IPR033131 -
Tan10g0389 513 SUPERFAMILY Pectin lyase-like 207 512 IPR011050 -
Tan10g0389 513 Pfam Pectinesterase 211 498 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Tan10g0389 513 Pfam Plant invertase/pectin methylesterase inhibitor 31 172 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan05g1934 Tan-Chr5:68105647 Tan10g0389 Tan-Chr10:3069015 2.80E-75 dispersed
Tan07g0203 Tan-Chr7:4599782 Tan10g0389 Tan-Chr10:3069015 6.40E-165 dispersed
Tan07g0869 Tan-Chr7:14777265 Tan10g0389 Tan-Chr10:3069015 1.90E-77 dispersed
Tan07g0870 Tan-Chr7:14863718 Tan10g0389 Tan-Chr10:3069015 1.40E-75 dispersed
Tan07g0985 Tan-Chr7:23190646 Tan10g0389 Tan-Chr10:3069015 3.60E-89 dispersed
Tan09g0149 Tan-Chr9:7600299 Tan10g0389 Tan-Chr10:3069015 4.00E-111 dispersed
Tan10g0389 Tan-Chr10:3069015 Tan11g1757 Tan-Chr11:18067381 6.60E-130 dispersed
Tan10g0388 Tan-Chr10:3042124 Tan10g0389 Tan-Chr10:3069015 1.30E-103 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0389 K01051 - csv:101217552 887.1