Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0419 ATGGCTGGCTTAGGCTTGGGCTCTGCTTCTCACTTTGTTCATCAACTCCAGCACCGTTCCGTCGATCTCCACCTGCAGCGGCCGCCGGATACTGACGACGGTTCCGACCAGTTCCACGGCGGCGATGACGACCACAACAACTCTCACCAACCCAACTCCGGCGGCGAAATCGTGGCCCGCCGCCAGAGGGGCCGACCGCCCGGTTCGAAAAATAAACCGAAGCCTCCGGTTATTATTACCAGAGAAAGCGCTAACACCCTTCGAGCCCACATCTTGGAAGTCAACACCGGTTGCGATGTCTTTGACTCGGTGGCCACGTATGCTCGTAAGCGCCAACGTGGAATCTGCATCCTGAGCGGCACCGGCACCGTCACCAACGTTACTTTACGCCAACCTGCGTCCGCCGGTGCTGTCATCACGCTCCCGGGCAGATTTGAGATATTGTCTTTGTCGGGATCGTTTTTACCGCCGCCCGCTCCGCCGGGGGCTACGAGTTTGACTATCTTTCTTGCCGGAGGGCAAGGGCAGATCGTCGGAGGGAATATTGTTGGCTCTTTGATTGCTTCCGGACCGGTGATCGTCATCGCTTCGTCGTTTACCAATGTTGCCTACGAGAGGCTGCCGTTGGACGAGGACGAACCGTCCAACGGCAGAGGTGGCGGTGGTGGTGGTGGAGGGAGCCTTAGCAACCCGTTTCCGGACGTATCGGCCGGGTTGCCGTTCTTTAATCTGCCGTTGAACATGCCGGCCGGGAATCAAAATCAGCTGCCGGTGGACGGATGGGGTGGAGGGAACTCCGGTGGGAGATCATCATATTGA 819 58.36 MAGLGLGSASHFVHQLQHRSVDLHLQRPPDTDDGSDQFHGGDDDHNNSHQPNSGGEIVARRQRGRPPGSKNKPKPPVIITRESANTLRAHILEVNTGCDVFDSVATYARKRQRGICILSGTGTVTNVTLRQPASAGAVITLPGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQIVGGNIVGSLIASGPVIVIASSFTNVAYERLPLDEDEPSNGRGGGGGGGGSLSNPFPDVSAGLPFFNLPLNMPAGNQNQLPVDGWGGGNSGGRSSY 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3375213 3376334 + Tan0012139.1 Tan10g0419 765213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0419 272 MobiDBLite consensus disorder prediction 207 230 - -
Tan10g0419 272 Gene3D - 87 214 - -
Tan10g0419 272 CDD DUF296 88 199 IPR005175 -
Tan10g0419 272 MobiDBLite consensus disorder prediction 24 46 - -
Tan10g0419 272 SUPERFAMILY AF0104/ALDC/Ptd012-like 84 212 - -
Tan10g0419 272 ProSiteProfiles PPC domain profile profile. 84 221 IPR005175 -
Tan10g0419 272 MobiDBLite consensus disorder prediction 24 77 - -
Tan10g0419 272 Pfam Plants and Prokaryotes Conserved (PCC) domain 88 200 IPR005175 -
Tan10g0419 272 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 37 219 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Tan10g0419 272 MobiDBLite consensus disorder prediction 253 272 - -
Tan10g0419 272 FunFam AT-hook motif nuclear-localized protein 87 214 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g0388 Tan-Chr8:3505718 Tan10g0419 Tan-Chr10:3375213 1.50E-59 dispersed
Tan09g1837 Tan-Chr9:69736639 Tan10g0419 Tan-Chr10:3375213 1.40E-57 dispersed
Tan10g0346 Tan-Chr10:2803196 Tan10g0419 Tan-Chr10:3375213 1.30E-55 dispersed
Tan10g0352 Tan-Chr10:2874910 Tan10g0419 Tan-Chr10:3375213 1.20E-21 dispersed
Tan10g0419 Tan-Chr10:3375213 Tan10g0717 Tan-Chr10:5902568 1.00E-57 dispersed
Tan10g0419 Tan-Chr10:3375213 Tan06g2213 Tan-Chr6:72524571 4.00E-86 wgd
Tan10g0419 Tan-Chr10:3375213 Tan07g1966 Tan-Chr7:71441659 2.90E-76 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0419 - - - 0.0