Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan10g0439 | ATGCCTCCAAGGAAGAAGCCTACTTCATCTTCCAAGAAGCTCAATTCAAATCAGCAATCGCAGCCTTCCAAGTTCGGCATCCAGCACTTCTTCGAGCGCCACTCTCAAAATGTTGCGCATTCTCAGAAGCTCACTCCACGAACATCCGATTCAAGAACTGATGTTTCTAACTCTGTGAATCATGGAGATGATCGGAATGTGGGACAGCCAGATTCTAAGGATGCGACTGCAGCTGCGGCGGCGGCGACCGATCAAAAGTCAGAGTTTCGGTTGCTTCCTGTGAGCGATGCAGTTTTAGCTTCTGAAAACCCTAAGTTGCCGCAGGTGAATGATGCTAGCTGTTCGTCTCTGAATACGACGCCTGAGAATTTGATTGCAGCCGTTGGAAATGCTGGTGATGACTTTTCTAACGAGCTGTCTCCAGAATTTTCCAAGTCCGTGTCCCTGAAGCGCTTCAAGTTCTCTCCCGGGATGCTGATTAAGCAAAGCCAGGAGGAGGGGACTACAAATGATGAGATCACATGGAAGATATCTCCAGTAAACGAAAGGCTTCAGGTTGTTTCAAAGCAATTGCCGGAAACTATAAGAGTTTTGGCGAACTCCTCAAGGCTCAGCTCTTTGAGAATTCGACAGTGTTCACGAAATAAGAATTCCCCTGTGGAGCCTGGAAATTTTGAGCAGTTGAGTTCACCAAACCTGAAACCTTCTGAAAGATCAGTTGCTTCGTTAAATAAGACTGGATTGAAAAGGTTAAATCCTAAACATGATATGGAACCTAATGGGGTTGCGATTGATAGCTTGAGTGGCTCTAGAGTAGCTAACAGTCAGAGTCCATTCCGGACGCCCCCATCTTTGTCATACTGCGATAAGATTGCCAATGATGTTGCATGTAATGAAGCACCTGATCACCCTATTTTAAGACCACACAAGAAGGCATTGCTTGAGCTTTTAGATCAAGTTGAAGATGTCATTTCTGTTGATACTGACGCTTCTCCCATTGACTTGGAGGAGGATTCATCTGAATTGCAAGGTAGAAATGGTAACAAATTGACTACCAGAGTTGATTCAGCTGCAGTGCAAGTCCCTGGAAGGATCCTAGACACAGTGGTGAAGGCATCCCCTTGCGATTTTCTTGTCTTGGAGGTAACTGAGAATTGTGAGCTGGCTGATACATCTGGTGTTAAACGCTCATATAAGGTTCTTCGCTTGCTAAATGAGCAAAGTGGAGAAGAGCGAGCTGTATATCTTTGGGAAGACTGGTTTGACAGTATAATTGCACCAGGAGATACTGTGAATGTTATTGGTGAGTTTGATGACCAAGGAAGATGTCATGTTGACCACGACAATAATTTTGTTATCCTACACCCCGATATACTAGTCTCTGGAACTCGGGTTGCTGGCCATTTGACCTGTCCAAGGAGGAGTGTTCTTGATGAGAGGCTGAAAAGTAACGAACAGTCAATTTCAGCATTAATTGGTACTTTGCTGCACCAGGTTTTTCAGGCTGGTCTTATAGAAGAGGCACCGACTGTCGCCTTTTTGGAAGAGGTTTCGAGTATGGTGCTTCAGAAAAGTATGGAAAATATATATGCATGTGGAGCAAATGAAAAGGATATACGCCAAACCATGAATGAAGCGGTTCCTAAAGTTTTGCATTGGATCACCCTCTTCAAATGCCCGATGGGTCCTAAAGCACCTACTATTGAGTTTAGATCTGATGATGGTCCCAGGAAAGTTAGTATATCGGAGGTGATTGATATTGAGGAGATGGCATGGGCTCCCAAATATGGGTTGAAAGGAATTATTGATGCTTCTGTCAGGGTAAATGTAACGTCAAATTATAATAACTGTGCCGAGAATGTCATGCCTTTAGAGTTTAAAACTGGAAAGGTGCCAGCTGGCCAGTCCTCCATGGAACATTGTGCCCAAGTGATCTTGTACACACTACTTATGTCCGAGAGGTACCAAAAACATGTTGGTTATGGGCTCCTTTACTATCTCCGGTCGGATCAGACACAGGGAATCCGGGTTCAAAGATCTGACTTGGTGGGGTTAATCATGCGTCGCAACGAGCTTGCAAATAACATCCTCAAGGCATCAACTGCACAATTACTTCCCCCCATGTTACAGATTCCAAGTGTGTGTAAAGGATGCCGCCATCTTGATGTTTGTACTATTTATCATAAGATGCAAAATGGAAACAAAGAGAGTAGTGGGCTTGGAGTTTTATTTGACTCCCATACAGATCATTTGAAAGCTTCTCATGGTATTTTCTTTCAGCATTGGGAAAGATTGATTGACTTAGAGGCCAAGGAGACAGAGCTTGTAAAGAGGGGAGTTTGGCACTCACGTAGTGCGGAGAAAAATCAAATGTCTACATGTCTTTCTTCTATTGTTCTTAGTACGTTGGATGACCAACCACATTGTACTTTTGAAAAGGACAACCGAATCAACTATCGTTTTGTGCATCAAGATTTGTCTTCACTGTGTTTGAAAGATTCGAATGGGGGTAGTTCAAACACTGCTTCAATAAATGAAATGGACAGTTCACTTAGAGTTGGAGACTATGTGATACTTAGCACAGATTCTGGGCATTTGACCCTAGCAAGTGGGATTATAACAGATCTAAGCAGTCTTCATATATCTGTTTCTTTTTCTAAGCGCCTACGTTTGCCTGGAAGCTCTTCTTCTACCGAGGCACATGATCTTATGAAGCAGGTTTGGCGGATTGACAAGGATGAATTTATGACTTCGTTTGCAGTCATGAGGTTTAATCTTGTACAACTGTTTCTGCAAGGTGAACAAAATGCTCATCTTAGAAAGTTAATCGTAGATCTTGCAGCTCCGAGATTTGACGGTGGATGCATATTCAGCCAGGATCCAGCAATATCATACATCTGGTCAGAGAAGAATTTAAATGATGACCAACGTCGGGCCATAATTAAGATACTTACAGCAAAGGATTATGCTCTGATTCTAGGAATGCCTGGAACGGGCAAGACATCCACGATGGTTCATGCCGTGAAGGCATTGTTGATGAGAGGTGTATCCATTTTGCTCACGTCTTACACAAACACAGCGGTTGATAATTTACTTATCAAACTGAAATCTCAGAACATTGATTTTATACGGATTGGAAGAATTAATGCAGTGCATGAAGACATTCGCAGCCATTGCTTCTCGGAGTTGAACATACAAAGTGTGGAAGACATCAGAATGAGATTGGACCAAGTAAAAGTTATTGCAGTTACTTGTTTGGGGATAACTAGTCCCTTGCTCGTCAACAAAAAATTTGATATATGCATAATGGATGAAGCTGGACAGACCACCCTTCCAGTTTCCCTTGGGCCTTTGATGTTTGCTTCAACATTTGTCCTTGTTGGCGATCACTATCAACTACCTCCTCTTGTTCAGAGTACAGAGGCTCGAGAAAATGGACTGGGGATAAGCTTGTTTTGTAGGCTTTCAGAAGCACATCCTCAAGCAATTTCCGCACTACAAAGCCAGTATCGCATGTGCCGAGACATAATGGAATTATCAAATGCCTTGATATATGGAGACAGATTGCGTTGTGGTTCTGACGAAACAGCGAACGCAAAGCTTGAATTTTCAAGTTTAAAATTGTCTTCATCTTGGCTCAAGGAGGTTCTAAACCCATGCAAACCAGTTATCTTTGTTTGTACAGATTTATTACCTGCTTACGAGACGAGAGATCACAAGATTGTGAACAACCCAATTGAAGCTAACATATTAGCGGAGGTGACGAAGGGATTGCTTGATGGTGGGATTAAAGGGAGTGACGTTGGCATTATTACTCCGTATAACTCCCAGGCAAGCATCATTCGTTTAGCTATCAACGTATCCTCCGTGGAGATACATACCATCGACAAATACCAGGGAAGAGATAAGGACTGCATATTGGTGTCCTTTGTTAGGTCGAGTGAAAATCCAAAGAGCTGTACTACCTCACTTCTTGGAGACTGGCATAGAATTAATGTGGCCATCACACGTGCCAAGAAAAAGCTAATCATGGTGGGATCACGCAAAACACTATCAAAAGTTCCACTGCTGAAGCTTCTAATCAAGAAGGTCGAGGAACAATCCGGCATCTTGATTGTAACAAGGAATGATATACGTCAAAGTAGCAAGCTTCATGGTTGCACATAG | 4167 | 42.93 | MPPRKKPTSSSKKLNSNQQSQPSKFGIQHFFERHSQNVAHSQKLTPRTSDSRTDVSNSVNHGDDRNVGQPDSKDATAAAAAATDQKSEFRLLPVSDAVLASENPKLPQVNDASCSSLNTTPENLIAAVGNAGDDFSNELSPEFSKSVSLKRFKFSPGMLIKQSQEEGTTNDEITWKISPVNERLQVVSKQLPETIRVLANSSRLSSLRIRQCSRNKNSPVEPGNFEQLSSPNLKPSERSVASLNKTGLKRLNPKHDMEPNGVAIDSLSGSRVANSQSPFRTPPSLSYCDKIANDVACNEAPDHPILRPHKKALLELLDQVEDVISVDTDASPIDLEEDSSELQGRNGNKLTTRVDSAAVQVPGRILDTVVKASPCDFLVLEVTENCELADTSGVKRSYKVLRLLNEQSGEERAVYLWEDWFDSIIAPGDTVNVIGEFDDQGRCHVDHDNNFVILHPDILVSGTRVAGHLTCPRRSVLDERLKSNEQSISALIGTLLHQVFQAGLIEEAPTVAFLEEVSSMVLQKSMENIYACGANEKDIRQTMNEAVPKVLHWITLFKCPMGPKAPTIEFRSDDGPRKVSISEVIDIEEMAWAPKYGLKGIIDASVRVNVTSNYNNCAENVMPLEFKTGKVPAGQSSMEHCAQVILYTLLMSERYQKHVGYGLLYYLRSDQTQGIRVQRSDLVGLIMRRNELANNILKASTAQLLPPMLQIPSVCKGCRHLDVCTIYHKMQNGNKESSGLGVLFDSHTDHLKASHGIFFQHWERLIDLEAKETELVKRGVWHSRSAEKNQMSTCLSSIVLSTLDDQPHCTFEKDNRINYRFVHQDLSSLCLKDSNGGSSNTASINEMDSSLRVGDYVILSTDSGHLTLASGIITDLSSLHISVSFSKRLRLPGSSSSTEAHDLMKQVWRIDKDEFMTSFAVMRFNLVQLFLQGEQNAHLRKLIVDLAAPRFDGGCIFSQDPAISYIWSEKNLNDDQRRAIIKILTAKDYALILGMPGTGKTSTMVHAVKALLMRGVSILLTSYTNTAVDNLLIKLKSQNIDFIRIGRINAVHEDIRSHCFSELNIQSVEDIRMRLDQVKVIAVTCLGITSPLLVNKKFDICIMDEAGQTTLPVSLGPLMFASTFVLVGDHYQLPPLVQSTEARENGLGISLFCRLSEAHPQAISALQSQYRMCRDIMELSNALIYGDRLRCGSDETANAKLEFSSLKLSSSWLKEVLNPCKPVIFVCTDLLPAYETRDHKIVNNPIEANILAEVTKGLLDGGIKGSDVGIITPYNSQASIIRLAINVSSVEIHTIDKYQGRDKDCILVSFVRSSENPKSCTTSLLGDWHRINVAITRAKKKLIMVGSRKTLSKVPLLKLLIKKVEEQSGILIVTRNDIRQSSKLHGCT | 1388 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 3555764 | 3570290 | - | Tan0020207.1 | Tan10g0439 | 765233 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan10g0439 | 1388 | CDD | DNA2_N-like | 461 | 696 | - | - | |
Tan10g0439 | 1388 | PANTHER | DNA2/NAM7 HELICASE FAMILY | 211 | 1365 | IPR045055 | GO:0005737(PANTHER)|GO:0017108(PANTHER)|GO:0071932(PANTHER) | |
Tan10g0439 | 1388 | Pfam | AAA domain | 1148 | 1348 | IPR041679 | - | |
Tan10g0439 | 1388 | MobiDBLite | consensus disorder prediction | 34 | 65 | - | - | |
Tan10g0439 | 1388 | CDD | SF1_C_Upf1 | 1172 | 1365 | IPR047187 | - | |
Tan10g0439 | 1388 | FunFam | DNA replication helicase | 1170 | 1383 | - | - | |
Tan10g0439 | 1388 | FunFam | DNA replication helicase Dna2 | 906 | 1169 | - | - | |
Tan10g0439 | 1388 | CDD | DEXXQc_DNA2 | 971 | 1171 | IPR026851 | GO:0017116(InterPro) | |
Tan10g0439 | 1388 | Gene3D | - | 1170 | 1384 | IPR027417 | - | |
Tan10g0439 | 1388 | MobiDBLite | consensus disorder prediction | 1 | 84 | - | - | |
Tan10g0439 | 1388 | FunFam | DNA replication helicase Dna2 | 571 | 725 | - | - | |
Tan10g0439 | 1388 | Pfam | AAA domain | 971 | 1063 | IPR041677 | GO:0004386(InterPro) | |
Tan10g0439 | 1388 | Pfam | AAA domain | 1071 | 1139 | IPR041677 | GO:0004386(InterPro) | |
Tan10g0439 | 1388 | MobiDBLite | consensus disorder prediction | 8 | 26 | - | - | |
Tan10g0439 | 1388 | MobiDBLite | consensus disorder prediction | 214 | 237 | - | - | |
Tan10g0439 | 1388 | Gene3D | - | 461 | 725 | IPR011604 | - | |
Tan10g0439 | 1388 | Pfam | DNA replication factor Dna2 | 406 | 608 | IPR014808 | - | |
Tan10g0439 | 1388 | Gene3D | - | 907 | 1169 | IPR027417 | - | |
Tan10g0439 | 1388 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 970 | 1356 | IPR027417 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan08g1425 | Tan-Chr8:58156222 | Tan10g0439 | Tan-Chr10:3555764 | 3.10E-44 | dispersed | |
Tan08g1426 | Tan-Chr8:58156222 | Tan10g0439 | Tan-Chr10:3555764 | 2.80E-44 | dispersed | |
Tan10g0439 | Tan-Chr10:3555764 | Tan04g1730 | Tan-Chr4:42751484 | 2.40E-17 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan10g0439 | K10742 | - | csv:101220726 | 2426.74 |