Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0439 ATGCCTCCAAGGAAGAAGCCTACTTCATCTTCCAAGAAGCTCAATTCAAATCAGCAATCGCAGCCTTCCAAGTTCGGCATCCAGCACTTCTTCGAGCGCCACTCTCAAAATGTTGCGCATTCTCAGAAGCTCACTCCACGAACATCCGATTCAAGAACTGATGTTTCTAACTCTGTGAATCATGGAGATGATCGGAATGTGGGACAGCCAGATTCTAAGGATGCGACTGCAGCTGCGGCGGCGGCGACCGATCAAAAGTCAGAGTTTCGGTTGCTTCCTGTGAGCGATGCAGTTTTAGCTTCTGAAAACCCTAAGTTGCCGCAGGTGAATGATGCTAGCTGTTCGTCTCTGAATACGACGCCTGAGAATTTGATTGCAGCCGTTGGAAATGCTGGTGATGACTTTTCTAACGAGCTGTCTCCAGAATTTTCCAAGTCCGTGTCCCTGAAGCGCTTCAAGTTCTCTCCCGGGATGCTGATTAAGCAAAGCCAGGAGGAGGGGACTACAAATGATGAGATCACATGGAAGATATCTCCAGTAAACGAAAGGCTTCAGGTTGTTTCAAAGCAATTGCCGGAAACTATAAGAGTTTTGGCGAACTCCTCAAGGCTCAGCTCTTTGAGAATTCGACAGTGTTCACGAAATAAGAATTCCCCTGTGGAGCCTGGAAATTTTGAGCAGTTGAGTTCACCAAACCTGAAACCTTCTGAAAGATCAGTTGCTTCGTTAAATAAGACTGGATTGAAAAGGTTAAATCCTAAACATGATATGGAACCTAATGGGGTTGCGATTGATAGCTTGAGTGGCTCTAGAGTAGCTAACAGTCAGAGTCCATTCCGGACGCCCCCATCTTTGTCATACTGCGATAAGATTGCCAATGATGTTGCATGTAATGAAGCACCTGATCACCCTATTTTAAGACCACACAAGAAGGCATTGCTTGAGCTTTTAGATCAAGTTGAAGATGTCATTTCTGTTGATACTGACGCTTCTCCCATTGACTTGGAGGAGGATTCATCTGAATTGCAAGGTAGAAATGGTAACAAATTGACTACCAGAGTTGATTCAGCTGCAGTGCAAGTCCCTGGAAGGATCCTAGACACAGTGGTGAAGGCATCCCCTTGCGATTTTCTTGTCTTGGAGGTAACTGAGAATTGTGAGCTGGCTGATACATCTGGTGTTAAACGCTCATATAAGGTTCTTCGCTTGCTAAATGAGCAAAGTGGAGAAGAGCGAGCTGTATATCTTTGGGAAGACTGGTTTGACAGTATAATTGCACCAGGAGATACTGTGAATGTTATTGGTGAGTTTGATGACCAAGGAAGATGTCATGTTGACCACGACAATAATTTTGTTATCCTACACCCCGATATACTAGTCTCTGGAACTCGGGTTGCTGGCCATTTGACCTGTCCAAGGAGGAGTGTTCTTGATGAGAGGCTGAAAAGTAACGAACAGTCAATTTCAGCATTAATTGGTACTTTGCTGCACCAGGTTTTTCAGGCTGGTCTTATAGAAGAGGCACCGACTGTCGCCTTTTTGGAAGAGGTTTCGAGTATGGTGCTTCAGAAAAGTATGGAAAATATATATGCATGTGGAGCAAATGAAAAGGATATACGCCAAACCATGAATGAAGCGGTTCCTAAAGTTTTGCATTGGATCACCCTCTTCAAATGCCCGATGGGTCCTAAAGCACCTACTATTGAGTTTAGATCTGATGATGGTCCCAGGAAAGTTAGTATATCGGAGGTGATTGATATTGAGGAGATGGCATGGGCTCCCAAATATGGGTTGAAAGGAATTATTGATGCTTCTGTCAGGGTAAATGTAACGTCAAATTATAATAACTGTGCCGAGAATGTCATGCCTTTAGAGTTTAAAACTGGAAAGGTGCCAGCTGGCCAGTCCTCCATGGAACATTGTGCCCAAGTGATCTTGTACACACTACTTATGTCCGAGAGGTACCAAAAACATGTTGGTTATGGGCTCCTTTACTATCTCCGGTCGGATCAGACACAGGGAATCCGGGTTCAAAGATCTGACTTGGTGGGGTTAATCATGCGTCGCAACGAGCTTGCAAATAACATCCTCAAGGCATCAACTGCACAATTACTTCCCCCCATGTTACAGATTCCAAGTGTGTGTAAAGGATGCCGCCATCTTGATGTTTGTACTATTTATCATAAGATGCAAAATGGAAACAAAGAGAGTAGTGGGCTTGGAGTTTTATTTGACTCCCATACAGATCATTTGAAAGCTTCTCATGGTATTTTCTTTCAGCATTGGGAAAGATTGATTGACTTAGAGGCCAAGGAGACAGAGCTTGTAAAGAGGGGAGTTTGGCACTCACGTAGTGCGGAGAAAAATCAAATGTCTACATGTCTTTCTTCTATTGTTCTTAGTACGTTGGATGACCAACCACATTGTACTTTTGAAAAGGACAACCGAATCAACTATCGTTTTGTGCATCAAGATTTGTCTTCACTGTGTTTGAAAGATTCGAATGGGGGTAGTTCAAACACTGCTTCAATAAATGAAATGGACAGTTCACTTAGAGTTGGAGACTATGTGATACTTAGCACAGATTCTGGGCATTTGACCCTAGCAAGTGGGATTATAACAGATCTAAGCAGTCTTCATATATCTGTTTCTTTTTCTAAGCGCCTACGTTTGCCTGGAAGCTCTTCTTCTACCGAGGCACATGATCTTATGAAGCAGGTTTGGCGGATTGACAAGGATGAATTTATGACTTCGTTTGCAGTCATGAGGTTTAATCTTGTACAACTGTTTCTGCAAGGTGAACAAAATGCTCATCTTAGAAAGTTAATCGTAGATCTTGCAGCTCCGAGATTTGACGGTGGATGCATATTCAGCCAGGATCCAGCAATATCATACATCTGGTCAGAGAAGAATTTAAATGATGACCAACGTCGGGCCATAATTAAGATACTTACAGCAAAGGATTATGCTCTGATTCTAGGAATGCCTGGAACGGGCAAGACATCCACGATGGTTCATGCCGTGAAGGCATTGTTGATGAGAGGTGTATCCATTTTGCTCACGTCTTACACAAACACAGCGGTTGATAATTTACTTATCAAACTGAAATCTCAGAACATTGATTTTATACGGATTGGAAGAATTAATGCAGTGCATGAAGACATTCGCAGCCATTGCTTCTCGGAGTTGAACATACAAAGTGTGGAAGACATCAGAATGAGATTGGACCAAGTAAAAGTTATTGCAGTTACTTGTTTGGGGATAACTAGTCCCTTGCTCGTCAACAAAAAATTTGATATATGCATAATGGATGAAGCTGGACAGACCACCCTTCCAGTTTCCCTTGGGCCTTTGATGTTTGCTTCAACATTTGTCCTTGTTGGCGATCACTATCAACTACCTCCTCTTGTTCAGAGTACAGAGGCTCGAGAAAATGGACTGGGGATAAGCTTGTTTTGTAGGCTTTCAGAAGCACATCCTCAAGCAATTTCCGCACTACAAAGCCAGTATCGCATGTGCCGAGACATAATGGAATTATCAAATGCCTTGATATATGGAGACAGATTGCGTTGTGGTTCTGACGAAACAGCGAACGCAAAGCTTGAATTTTCAAGTTTAAAATTGTCTTCATCTTGGCTCAAGGAGGTTCTAAACCCATGCAAACCAGTTATCTTTGTTTGTACAGATTTATTACCTGCTTACGAGACGAGAGATCACAAGATTGTGAACAACCCAATTGAAGCTAACATATTAGCGGAGGTGACGAAGGGATTGCTTGATGGTGGGATTAAAGGGAGTGACGTTGGCATTATTACTCCGTATAACTCCCAGGCAAGCATCATTCGTTTAGCTATCAACGTATCCTCCGTGGAGATACATACCATCGACAAATACCAGGGAAGAGATAAGGACTGCATATTGGTGTCCTTTGTTAGGTCGAGTGAAAATCCAAAGAGCTGTACTACCTCACTTCTTGGAGACTGGCATAGAATTAATGTGGCCATCACACGTGCCAAGAAAAAGCTAATCATGGTGGGATCACGCAAAACACTATCAAAAGTTCCACTGCTGAAGCTTCTAATCAAGAAGGTCGAGGAACAATCCGGCATCTTGATTGTAACAAGGAATGATATACGTCAAAGTAGCAAGCTTCATGGTTGCACATAG 4167 42.93 MPPRKKPTSSSKKLNSNQQSQPSKFGIQHFFERHSQNVAHSQKLTPRTSDSRTDVSNSVNHGDDRNVGQPDSKDATAAAAAATDQKSEFRLLPVSDAVLASENPKLPQVNDASCSSLNTTPENLIAAVGNAGDDFSNELSPEFSKSVSLKRFKFSPGMLIKQSQEEGTTNDEITWKISPVNERLQVVSKQLPETIRVLANSSRLSSLRIRQCSRNKNSPVEPGNFEQLSSPNLKPSERSVASLNKTGLKRLNPKHDMEPNGVAIDSLSGSRVANSQSPFRTPPSLSYCDKIANDVACNEAPDHPILRPHKKALLELLDQVEDVISVDTDASPIDLEEDSSELQGRNGNKLTTRVDSAAVQVPGRILDTVVKASPCDFLVLEVTENCELADTSGVKRSYKVLRLLNEQSGEERAVYLWEDWFDSIIAPGDTVNVIGEFDDQGRCHVDHDNNFVILHPDILVSGTRVAGHLTCPRRSVLDERLKSNEQSISALIGTLLHQVFQAGLIEEAPTVAFLEEVSSMVLQKSMENIYACGANEKDIRQTMNEAVPKVLHWITLFKCPMGPKAPTIEFRSDDGPRKVSISEVIDIEEMAWAPKYGLKGIIDASVRVNVTSNYNNCAENVMPLEFKTGKVPAGQSSMEHCAQVILYTLLMSERYQKHVGYGLLYYLRSDQTQGIRVQRSDLVGLIMRRNELANNILKASTAQLLPPMLQIPSVCKGCRHLDVCTIYHKMQNGNKESSGLGVLFDSHTDHLKASHGIFFQHWERLIDLEAKETELVKRGVWHSRSAEKNQMSTCLSSIVLSTLDDQPHCTFEKDNRINYRFVHQDLSSLCLKDSNGGSSNTASINEMDSSLRVGDYVILSTDSGHLTLASGIITDLSSLHISVSFSKRLRLPGSSSSTEAHDLMKQVWRIDKDEFMTSFAVMRFNLVQLFLQGEQNAHLRKLIVDLAAPRFDGGCIFSQDPAISYIWSEKNLNDDQRRAIIKILTAKDYALILGMPGTGKTSTMVHAVKALLMRGVSILLTSYTNTAVDNLLIKLKSQNIDFIRIGRINAVHEDIRSHCFSELNIQSVEDIRMRLDQVKVIAVTCLGITSPLLVNKKFDICIMDEAGQTTLPVSLGPLMFASTFVLVGDHYQLPPLVQSTEARENGLGISLFCRLSEAHPQAISALQSQYRMCRDIMELSNALIYGDRLRCGSDETANAKLEFSSLKLSSSWLKEVLNPCKPVIFVCTDLLPAYETRDHKIVNNPIEANILAEVTKGLLDGGIKGSDVGIITPYNSQASIIRLAINVSSVEIHTIDKYQGRDKDCILVSFVRSSENPKSCTTSLLGDWHRINVAITRAKKKLIMVGSRKTLSKVPLLKLLIKKVEEQSGILIVTRNDIRQSSKLHGCT 1388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3555764 3570290 - Tan0020207.1 Tan10g0439 765233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0439 1388 CDD DNA2_N-like 461 696 - -
Tan10g0439 1388 PANTHER DNA2/NAM7 HELICASE FAMILY 211 1365 IPR045055 GO:0005737(PANTHER)|GO:0017108(PANTHER)|GO:0071932(PANTHER)
Tan10g0439 1388 Pfam AAA domain 1148 1348 IPR041679 -
Tan10g0439 1388 MobiDBLite consensus disorder prediction 34 65 - -
Tan10g0439 1388 CDD SF1_C_Upf1 1172 1365 IPR047187 -
Tan10g0439 1388 FunFam DNA replication helicase 1170 1383 - -
Tan10g0439 1388 FunFam DNA replication helicase Dna2 906 1169 - -
Tan10g0439 1388 CDD DEXXQc_DNA2 971 1171 IPR026851 GO:0017116(InterPro)
Tan10g0439 1388 Gene3D - 1170 1384 IPR027417 -
Tan10g0439 1388 MobiDBLite consensus disorder prediction 1 84 - -
Tan10g0439 1388 FunFam DNA replication helicase Dna2 571 725 - -
Tan10g0439 1388 Pfam AAA domain 971 1063 IPR041677 GO:0004386(InterPro)
Tan10g0439 1388 Pfam AAA domain 1071 1139 IPR041677 GO:0004386(InterPro)
Tan10g0439 1388 MobiDBLite consensus disorder prediction 8 26 - -
Tan10g0439 1388 MobiDBLite consensus disorder prediction 214 237 - -
Tan10g0439 1388 Gene3D - 461 725 IPR011604 -
Tan10g0439 1388 Pfam DNA replication factor Dna2 406 608 IPR014808 -
Tan10g0439 1388 Gene3D - 907 1169 IPR027417 -
Tan10g0439 1388 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 970 1356 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan08g1425 Tan-Chr8:58156222 Tan10g0439 Tan-Chr10:3555764 3.10E-44 dispersed
Tan08g1426 Tan-Chr8:58156222 Tan10g0439 Tan-Chr10:3555764 2.80E-44 dispersed
Tan10g0439 Tan-Chr10:3555764 Tan04g1730 Tan-Chr4:42751484 2.40E-17 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0439 K10742 - csv:101220726 2426.74