Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0489 ATGGAATTCCCTTGCAGTAGCAACGGTGCCGGAGCTTCGATGAAGCTCTCCGTCTGTTCCTCGTCTTCTTCCTCGTATTCGTTCTCCGTATCGGAGTTCGATCAGCCATTTACAGAGCAACAACTCCAAGCAATCGAGACCATTGAAGCTGCATATCAATCCACTAGCGCCAAAAGACGACGAGCATGTTCCACACCCGACGGAAACGAGGTCTCGTGCGTTTCGCCCAACTCCGGCCGTCGATTGCCTCGTTCCATTTTGTCTCTCCAGTCGCCACATTCTTCTCCATTATCTCCCTGTCGAGAAAACTCGAAGATGAGATTTCCTGCATTGAATTTTGGTGGCCGGATTATTTACAGTAGAACTGCGAGTGAGGTAGATAGAGCGTCCAGGGAGCTAGCTAAGAAAATCAACTCCATGAGGAAAGGAATGGATCAAATAACCATTGGATTCGACATCGAGTGGAAACCCACATTTAGAAGAGGTGTTCCACCCGGAAAGGCAGCAGTAATGCAACTGTGCTTGGACAATTCTCAATGCCATGTGATGCATATCATTCATTCAGGAATACCCCAAAGTTTGCAGGCTCTTCTAGAGGATGATACACTGAGCAAGGCTGGAGTTGGCATTGTCAACGATGCTATGAAAGTTTTTAAAGATTATAACGTGTCTATCAAGGCAGTGGATGAGATTTCGGATCTAGCTAATCAAAAGCTTGCTGGAGTTCCCAAAAAATGGAGTCTGAGGTCTCTAACTGAGACGCTCCTATCAAAAGAGCTTCAAAAGCCCAACAAAATCAGGCTTGGAAACTGGGAGGTCGCTGTGTTATCAAAGGAGCAACTGCAATATGCTGCCACAGATGCATTTGCTTCTTGGTACTTACATGAGATCTTAAAGGGATTTCCACATGCTCAAAAAGCAGCAGAGGATTCAGAGGGAGATAAGGAAGCAATCTGTGTGATGCCACAATGA 972 46.09 MEFPCSSNGAGASMKLSVCSSSSSSYSFSVSEFDQPFTEQQLQAIETIEAAYQSTSAKRRRACSTPDGNEVSCVSPNSGRRLPRSILSLQSPHSSPLSPCRENSKMRFPALNFGGRIIYSRTASEVDRASRELAKKINSMRKGMDQITIGFDIEWKPTFRRGVPPGKAAVMQLCLDNSQCHVMHIIHSGIPQSLQALLEDDTLSKAGVGIVNDAMKVFKDYNVSIKAVDEISDLANQKLAGVPKKWSLRSLTETLLSKELQKPNKIRLGNWEVAVLSKEQLQYAATDAFASWYLHEILKGFPHAQKAAEDSEGDKEAICVMPQ 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3953006 3956444 + Tan0018400.1 Tan10g0489 765283

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0489 323 CDD WRN_exo 121 299 - -
Tan10g0489 323 PANTHER 3-5 EXONUCLEASE 77 296 IPR051132 GO:0008408(PANTHER)
Tan10g0489 323 SMART 35exoneu6 117 303 IPR002562 GO:0003676(InterPro)|GO:0006139(InterPro)|GO:0008408(InterPro)
Tan10g0489 323 Pfam 3'-5' exonuclease 134 299 IPR002562 GO:0003676(InterPro)|GO:0006139(InterPro)|GO:0008408(InterPro)
Tan10g0489 323 Gene3D - 100 301 IPR036397 GO:0003676(InterPro)
Tan10g0489 323 MobiDBLite consensus disorder prediction 57 77 - -
Tan10g0489 323 FunFam Werner Syndrome-like exonuclease 100 305 - -
Tan10g0489 323 SUPERFAMILY Ribonuclease H-like 146 299 IPR012337 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0489 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g922 . . . . . . . . . . . . Car06g01051 . Sed02g1532 Cpe08g00414 . Bhi01g00195 Tan10g0489 Cmetu04g0875 . Hepe05g1779 . Lcy11g1794 . . . . . . . . . Cone7ag0412 . Lsi05g01862 . . Cme06g00364 . . Bda11g00322 . . Bpe13g00871 . . . Cmo06g01236 . . . . . . . . . . . . . . Cla05g00328 Cam05g0358 Cec05g0361 Cco05g0364 Clacu05g0354 Cmu05g0339 Cre05g0402 . Csa03g01074 Chy06g00344 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010236 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 2 1 1 32