Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0493 ATGCAGTGCTCCGATTTTACCTTTTCAGGAAGCGATTCACGCTTCTTCATCCCTTCGAACCCTAGCATTACCGGCCGGCGACCAATTTCCGGACACCGATCTCGGATTTTCTTCCCCAACACTCCGCCGTGCAATTCGACTCGCTTTCCGTCTCTTTCGATCAGAGCCAAGGCCTCGTTCAACGAAGGAACCGCCTCTTCCGAGGTTGCCGATGGCTCCTTCTACGACTTGCTAGGCATTTCCGAGTCCGGATCCTTGGCGGAAATCAAGCGCGCCTACAAGCAGCTCGCTCGGAAGTACCATCCGGACGTGTCGCCGCCGGGCCGGGCGGAGGAGTATACGAAGAGGTTCATTCGTGTTCAGGAGGCGTACGAAACATTGTCGGATCCACGAAGGAGAGCGCTGTATGATAGAGATACGGTTGGAGGCCTTCAAGTCGCGTTCTCTGCTCGGAGACGATACGGCACCGATGAGGTAGTTCCAGAGAAAAGTGGATGGAAAAATTGCTGGCAAGTTCAGATCTCAGAATTGAAGAGAAGAAGCATGGACAAGGATTCGAGACATAATTTGTCATGGGGAGCTCGAATGCGCCGGCAAATGAATGAACATTGA 612 53.1 MQCSDFTFSGSDSRFFIPSNPSITGRRPISGHRSRIFFPNTPPCNSTRFPSLSIRAKASFNEGTASSEVADGSFYDLLGISESGSLAEIKRAYKQLARKYHPDVSPPGRAEEYTKRFIRVQEAYETLSDPRRRALYDRDTVGGLQVAFSARRRYGTDEVVPEKSGWKNCWQVQISELKRRSMDKDSRHNLSWGARMRRQMNEH 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3978875 3980342 - Tan0020651.1 Tan10g0493 765287

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0493 203 ProSitePatterns Nt-dnaJ domain signature. 117 136 IPR018253 -
Tan10g0493 203 ProSiteProfiles dnaJ domain profile. 73 140 IPR001623 -
Tan10g0493 203 PRINTS DnaJ domain signature 93 108 IPR001623 -
Tan10g0493 203 PRINTS DnaJ domain signature 132 151 IPR001623 -
Tan10g0493 203 PRINTS DnaJ domain signature 75 93 IPR001623 -
Tan10g0493 203 PRINTS DnaJ domain signature 112 132 IPR001623 -
Tan10g0493 203 SUPERFAMILY Chaperone J-domain 73 149 IPR036869 -
Tan10g0493 203 FunFam Chaperone protein dnaJ 20, chloroplastic 59 168 - -
Tan10g0493 203 Pfam DnaJ domain 74 137 IPR001623 -
Tan10g0493 203 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 38 202 IPR053232 GO:0009507(PANTHER)|GO:0061077(PANTHER)
Tan10g0493 203 Gene3D DnaJ domain 58 156 IPR036869 -
Tan10g0493 203 SMART dnaj_3 72 132 IPR001623 -
Tan10g0493 203 CDD DnaJ 74 129 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0493 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2087 Tan-Chr3:75752777 Tan10g0493 Tan-Chr10:3978875 1.10E-11 dispersed
Tan05g1165 Tan-Chr5:10970975 Tan10g0493 Tan-Chr10:3978875 2.90E-13 dispersed
Tan10g0493 Tan-Chr10:3978875 Tan05g0938 Tan-Chr5:7612075 7.10E-11 dispersed
Tan02g1253 Tan-Chr2:32729891 Tan10g0493 Tan-Chr10:3978875 1.00E-15 transposed
Tan10g0493 Tan-Chr10:3978875 Tan06g2282 Tan-Chr6:73801405 8.00E-55 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g931 . . . . . . . . . Cmo17g00091 . Cma14g01907 Car06g01052 Car14g01708 Sed02g1527 Cpe08g00413 Cpe03g01608 Bhi01g00197 Tan10g0493 Cmetu06g2051 Lac12g2015 Hepe05g1777 . Lcy11g1792 . . . . . . . Cone14ag0245 Cone15ag0262 Cone7ag0410 . Lsi05g01860 . . Cme06g00366 . . Bda11g00324 Bda13g00476 . Bpe13g00869 Bma02g01194 Bma06g01272 Sed09g0169 Cmo06g01237 Cmo14g01962 . Cma17g00085 . Car17g00080 Cpe12g00078 . Bhi12g01476 Tan06g2282 Cmetu05g1668 . Hepe03g0378 . . Cla05g00330 Cam05g0360 Cec05g0364 Cco05g0366 Clacu05g0357 Cmu05g0342 Cre05g0405 Lsi09g01122 Csa03g01076 Chy06g00346 Cme05g00736
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002087 3 2 2 2 2 2 4 2 1 1 1 1 4 2 1 4 1 3 4 2 1 2 2 2 2 2 2 3 2 1 63