Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0505 ATGTCGCTGGATTTTCGAAAGTTCTCTTCCTATTCTCGTCTTCGTTTTCTTCTTTTGTTATTTTGTGATTGCCATTTTTTGACTGGTTTCGAAACAATGAAGCTTACTGAATTTCTTGGTTATCTTATTTATGAGTTGCAAACTAATCGTATTCAATTGATGTCGAGTTCAGAGATTAAAGGAGTTGACTTTGTCAAAGATTCAGTCAAGACTGAAATTCCTTGTCAGAAGTTCCAAGAAGATGCAGGAATCTGCATGGATTGGATAAAAATTTTTAGTACTGCCAGTGTTTTCATCACATTAGCATCATGTACCAATAAAAGGACGTTAATATTTGTGTTGCTTCGGAGTTCGCAAGTACCAGAATTTGGTAAGTGGGATGAGGGGGAAGATGTCCCATATACAACCTATTTTGACAATGCAACAAAGGGTAAATCCGAGAGGTTGAATCCAAATGATCCTTCTCCTCGCCGAGAGGAGATTTCAGACACAGTAAAGTCAAACTATGAGCAACACAAAATTAAAGGTGTTGTTGTGAGGAGGCAAACTGAGTCTCCATTGCACCGTGATGGTTTGGAACTGCCTGGTTGGGATAATGACGGTATAAAGTCAGCGAAGAGTCGAGGTCAACAAGCATTAAAGCCAAAGCGCACACAAGAAGATTTGAGCTTGGAAGATGGTAACATGAAAAAACATCTCGATTTTCCTTTGGACCATCAAACGAGGGGTCAGGTTAGCTTTAACTCCCCTCGTCATCAACATCAGGGGAAAAACACGACCAGTAATTCATCTAAAAGGACTATGAGAAATGGTGCAGGTTCTGACGGTAGCATAGAAAATTCACCTCTCCATCCACGACAACTACCAAGGACCGAAGCGAAAAGTGTTGTACCATCCTCGCCATTACGAGACAGAAGGGGTTCAAGTTCACCTAAAGGAGGTAGTCATGATGTTATAGCTCCCTTGACTCCTGGAAGATCACGCCAACGATCTGTTCCTCGGGGCAATGAAACCCCTGATCGTAGTGCCACTGTCCCAAAATTTGGTGACTGGGACGAGAGCGATCCAACATCATCGGAGAACTACACAAATATTTTCACCAGAGTGCGCGAGGAGAAACAAACTGAGGACGGAAGTTTGCAGGCGGGGACCAATGTTTCTCATGCCAACAGTCGAAGTCGATGTTGCTGTTTTCCATGGGGGAAATGA 1209 42.76 MSLDFRKFSSYSRLRFLLLLFCDCHFLTGFETMKLTEFLGYLIYELQTNRIQLMSSSEIKGVDFVKDSVKTEIPCQKFQEDAGICMDWIKIFSTASVFITLASCTNKRTLIFVLLRSSQVPEFGKWDEGEDVPYTTYFDNATKGKSERLNPNDPSPRREEISDTVKSNYEQHKIKGVVVRRQTESPLHRDGLELPGWDNDGIKSAKSRGQQALKPKRTQEDLSLEDGNMKKHLDFPLDHQTRGQVSFNSPRHQHQGKNTTSNSSKRTMRNGAGSDGSIENSPLHPRQLPRTEAKSVVPSSPLRDRRGSSSPKGGSHDVIAPLTPGRSRQRSVPRGNETPDRSATVPKFGDWDESDPTSSENYTNIFTRVREEKQTEDGSLQAGTNVSHANSRSRCCCFPWGK 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4064102 4067351 - Tan0016520.1 Tan10g0505 765299

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0505 402 MobiDBLite consensus disorder prediction 241 281 - -
Tan10g0505 402 MobiDBLite consensus disorder prediction 241 392 - -
Tan10g0505 402 MobiDBLite consensus disorder prediction 142 226 - -
Tan10g0505 402 MobiDBLite consensus disorder prediction 150 196 - -
Tan10g0505 402 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 339 375 IPR008700 -
Tan10g0505 402 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 119 400 IPR040387 GO:0005886(PANTHER)
Tan10g0505 402 MobiDBLite consensus disorder prediction 378 392 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0505 K13456 - - csv:101211635 453.366
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g0505 Tan-Chr10:4064102 Tan07g2092 Tan-Chr7:72344165 8.50E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g946 . . . . . . . . . . . . . Car14g01704 Sed02g1520 . Cpe03g01603 Bhi01g00211 Tan10g0505 Cmetu06g1239 . . . . . . . . . . . . . Cone7ag0404 . Lsi05g01853 . . Cme06g00373 . . Bda11g00342 . . Bpe13g00864 . Bma06g01276 . . Cmo14g01956 . . . . . . . . . . . . . Cla05g00337 Cam05g0370 Cec05g0374 Cco05g0375 Clacu05g0364 Cmu05g0349 Cre05g0413 . Csa03g01084 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003340 2 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 0 1 1 1 9 1 1 49