Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0516 ATGGGGAAGAAGGTTAAGAAGAAGAACCCCCGAGCTCCTCCAAAGGAGAAGCGGGTATCTTCAAGTTCACCGAGGAAGGTGCCCCAGCAAAGCAGCACAACGGCGGAGATTGCTGATGATGATGTTTCAGTTGTTAAGGAGAAAAGCCAATGCCGGCATGTTGATAAATGCTTTAATTTAAATGAGTTATCATCTAAACTTGGGTCCTCGGAACCTATTAGCTGTGAAGATTGTCAAGAAAGTTCAGCTGATAGAAGGGGGAGTAAGGGGAAGGCTAGACATGGGAAGAAAAAGGGGGGAACTCCTGTGGATGTTAAAGCTGATTCCAAAGCAATTTGGATTTGTTTGCAGTGTGGCCATTATGCCTGTGGAGGTGTTGGACTTCCTACAAACTCTCAGAGTCATGCTGTTCGGCATGTCAGGCAAACTCGTCACCCTGTGGTGATTCAGTTTGAAAACCCGCTGCTTCGATGGTGTTTCTCTTGCAATACACTACTTCCAGTAGAGAAAACTGAAGAGAATGGTGAACAAAAAGATGGCTTGTCTGATGTGGTGAAATTAATTAGGGACCGATCAATGGAAGCCTTGCCTGTGGATGTTGAGAATACATGGCATTCAAGTAGTGATGTTACAGCTGCGACTAAATCAGAAAGTTCCATATTAAGTGATTTGGACAGAAGAAATCATTATGTTGTAAAAGGCTTGATTAATCTAGGTAACACTTGTTTTTTCAATTCAATCCTTCAAAATCTCTTGGCCATTGATATGTTGAGAGATCATTTCATGAAATTGGAAGAATGTGTTGGACCTCTAACTATAGCTTTGAAGAAGATCTTTATAGAAGCAAGAATGGAAGGCAGAATGAAAGGTTCAATAAATCCAAGATCAGTTTTTGGTTGTATCTCTACCAAAGCCCCTCAGTTCAAAGGATATGAGCAACATGATAGTCACGAATTGCTTCGTGTCCTACTTGATGGATTGTCTACTGAAGAGCTGACTTCAAGGAAGATGAAGAAGTCAAAGGAAGAGAGAATATCTGGAAATCCCACTTCTACTTTTGTCGATGAGATGTTTGGGGGGCAAATATCAAGTGCTGTATGTTGCAAAGAATGTGGCCACACATCGACAGTTTATGAACCATTTCTAGATCTCTCTCTTCCTGTTCCAATGAAGAAAGCTCTGACCAAAAAGGTTCAACCAGTCTCTCGGGGAAAGAAGACAAAAGTGCCACCCAAGAGAAGTGGAAAGACTTTTCCTAAAACTGACAAGGCTTCAGATGTTGTACCAGTTCAAATTGCCTCAGCTTCATCATCTAGTATTGAGTCTTCCCTTCCATCAGAGGCCAGCGCCAGTGGCACAACTACCATCATGGAGAATACTTTAAGTTCTCAGAATGTCCCAGTTGTTAAAGAGTCTGAAAAAGAAGTTTTGATTGAGAATGGAGGAGAACGTACTTCAGATGATTTGACGTGGATGTATTTCCTTGGACCAGAACCAAATGTTGAAAATTGTGATATTTCCACTACTCAGGACTCTGAAAACAATGTTGAAGTATTTATTAGTGACGATTCACAACAAAGCATCTCTGGGTCGAGTATGCAGGTGTCATCCCATCACAATCAACGACCAGATTTTTCTCCAATGGATTCGTGGGATGATGAATCTCCTTTACAGGTTCAAGCCTCTGAAGTTTTGCTGCTTCCTTACAAGGAAGAGAGTTCCACTGCTGAAGTAGCAAAAGGAGATGATCAGGCTTCCTCATCAATTTTGGGCTGTGCTCAAGATGATTTTGATGGATTTGGCCTTGGGGGTATGTTTGATGAGCCTGAAGTCACTATAGGACCCATTGCGAGGCCCTCCACTGGGAATGAAGCTTCGGAAAGTAGTTTTATTAGTGAGTCTGATCCTGAGGAAGTTGATAATACTGATTCTCCTGTCTCTGTGGAGAGTTGTCTAACTTATTTCACAAAGCCAGAACTTCTGTCCAACGAAAATGGATATAACTGTGAGAAGTGCTCAAAAAGAATACAACAACAAAGGTTGGAAATGAAGAAGCAATCAAAGCTTGCTTGCAAAGCTGTAGCAAATGGGTATCAAACTGCAGTGAGGGGTGATGTATCATGTTTCAACGAGGACTCTTCAGTTGAAGTCAAAAATCAAAGAAATATGAATTTAATAAATGGCTCCATAAGTTATAATAGTTGTGAAAGCTCGAATTTGAAAGAGAATGTAGATTGTTCCAGCCAAGATTGCAGTAAACCTGGCAATTGCCAGACAGGCAAAATGGGTTCCCTTGTTCTGGATGACGATGAAGCTAAGGTTGACGGAGATATGAATCCTGGGCAAGCATATTCTACAGGTTGTAATAACATCAGCAATCAAGAGAACTCAGGTGATAAATCCAGTTGTTCTCTTTCCAATGATGATTCTAGAGGCAGTAGACTTCCAAAAACCAAAATTGAGCCCTTGAGTTCGCAAATATCTGCCGTGAACAGTAAATCAGAAAAATGTGAGGATGGTGAGATGGATTCTGATTCAACAATTGTGAATGTGAAAAGAGATGCAACAAAGAGGTTTCTCATTCACAAGGCCCCTCCTATCTTGACAATTCATATAAAGAGGTTCAGTCCCGATGCTCGGGGTCGTTATAGTAAATTGAATGGTCATGTCAGATTCAAGGAAACAATTGATCTTAAACCATACATGGATACCAGCTTATTATCAGATCAGAAGCTGTGCTTCAATGGTAGCACATGA 2757 41.13 MGKKVKKKNPRAPPKEKRVSSSSPRKVPQQSSTTAEIADDDVSVVKEKSQCRHVDKCFNLNELSSKLGSSEPISCEDCQESSADRRGSKGKARHGKKKGGTPVDVKADSKAIWICLQCGHYACGGVGLPTNSQSHAVRHVRQTRHPVVIQFENPLLRWCFSCNTLLPVEKTEENGEQKDGLSDVVKLIRDRSMEALPVDVENTWHSSSDVTAATKSESSILSDLDRRNHYVVKGLINLGNTCFFNSILQNLLAIDMLRDHFMKLEECVGPLTIALKKIFIEARMEGRMKGSINPRSVFGCISTKAPQFKGYEQHDSHELLRVLLDGLSTEELTSRKMKKSKEERISGNPTSTFVDEMFGGQISSAVCCKECGHTSTVYEPFLDLSLPVPMKKALTKKVQPVSRGKKTKVPPKRSGKTFPKTDKASDVVPVQIASASSSSIESSLPSEASASGTTTIMENTLSSQNVPVVKESEKEVLIENGGERTSDDLTWMYFLGPEPNVENCDISTTQDSENNVEVFISDDSQQSISGSSMQVSSHHNQRPDFSPMDSWDDESPLQVQASEVLLLPYKEESSTAEVAKGDDQASSSILGCAQDDFDGFGLGGMFDEPEVTIGPIARPSTGNEASESSFISESDPEEVDNTDSPVSVESCLTYFTKPELLSNENGYNCEKCSKRIQQQRLEMKKQSKLACKAVANGYQTAVRGDVSCFNEDSSVEVKNQRNMNLINGSISYNSCESSNLKENVDCSSQDCSKPGNCQTGKMGSLVLDDDEAKVDGDMNPGQAYSTGCNNISNQENSGDKSSCSLSNDDSRGSRLPKTKIEPLSSQISAVNSKSEKCEDGEMDSDSTIVNVKRDATKRFLIHKAPPILTIHIKRFSPDARGRYSKLNGHVRFKETIDLKPYMDTSLLSDQKLCFNGST 918
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4134727 4139585 - Tan0001842.2 Tan10g0516 765310

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0516 918 Gene3D Cysteine proteinases 213 417 - -
Tan10g0516 918 SUPERFAMILY RING/U-box 50 165 - -
Tan10g0516 918 MobiDBLite consensus disorder prediction 525 553 - -
Tan10g0516 918 MobiDBLite consensus disorder prediction 774 819 - -
Tan10g0516 918 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 234 249 IPR018200 GO:0004843(InterPro)
Tan10g0516 918 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 33 903 IPR050185 -
Tan10g0516 918 Pfam Zn-finger in ubiquitin-hydrolases and other protein 108 164 IPR001607 GO:0008270(InterPro)
Tan10g0516 918 MobiDBLite consensus disorder prediction 525 544 - -
Tan10g0516 918 Gene3D Cysteine proteinases 502 691 - -
Tan10g0516 918 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 233 918 IPR028889 -
Tan10g0516 918 MobiDBLite consensus disorder prediction 616 644 - -
Tan10g0516 918 Pfam Ubiquitin carboxyl-terminal hydrolase 234 909 IPR001394 GO:0004843(InterPro)|GO:0016579(InterPro)
Tan10g0516 918 ProSiteProfiles Zinc finger UBP-type profile. 49 186 IPR001607 GO:0008270(InterPro)
Tan10g0516 918 MobiDBLite consensus disorder prediction 395 425 - -
Tan10g0516 918 MobiDBLite consensus disorder prediction 67 103 - -
Tan10g0516 918 FunFam Ubiquitinyl hydrolase 1 46 189 - -
Tan10g0516 918 MobiDBLite consensus disorder prediction 398 413 - -
Tan10g0516 918 MobiDBLite consensus disorder prediction 1 41 - -
Tan10g0516 918 MobiDBLite consensus disorder prediction 23 38 - -
Tan10g0516 918 SUPERFAMILY Cysteine proteinases 225 907 IPR038765 -
Tan10g0516 918 MobiDBLite consensus disorder prediction 782 811 - -
Tan10g0516 918 Gene3D Cysteine proteinases 706 914 - -
Tan10g0516 918 SMART Zf_UBP_1 103 156 IPR001607 GO:0008270(InterPro)
Tan10g0516 918 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 186 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0516 K11844 - - csv:101204267 1463.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g0515 Tan-Chr10:4134727 Tan10g0516 Tan-Chr10:4134727 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g908 . . . . . . . . . . Cma06g01231 Cma14g01897 . Car14g01712 . Cpe08g00400 Cpe03g01596 Bhi01g00227 Tan10g0516 . . Hepe05g1764 . . . . . . . . . . . Cone7ag0396 . Lsi05g01845 . . . . . . . . . . . . Cmo06g01250 Cmo14g01949 . . . . . . . . . . . . . . . . . . . . . Csa03g01091 Chy06g00361 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007495 1 2 1 0 1 1 2 1 1 1 1 1 1 1 1 3 1 1 2 1 1 1 1 1 0 1 1 2 2 1 35