Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tan10g0520 | ATGCTCTCTGGGTTTTCTCAGGAACCGGCCGGAATGTATTCAGCCATTCCGGCGCTGCCGATCGACGGCGGCGGCCACGGCAAGTTTCAGGGTTCTCTTGACGGAACGAATCTTCCCGGTGACGCTTGTTTGGTTCTCACGTCGGATCCGAAGCCGCGCCTCCGTTGGACGGCGGAACTTCATGAGCGATTTGTCGACGCCGTCACTCAGCTCGGCGGCCCTGACAAGGCAACCCCAAAAACAATTATGAGAACAATGGGAGTAAAAGGTCTCACCCTTTATCACTTAAAATCACACCTCCAGAAATATCGGCTCGGGAAGCAGTCGTTCAAGGAATCGACTGAGAACTCAAAGGATGCTTCATGTATGGCAGAAAGTCAAGAAACAAGTTCCTCTTCGTCACCATCGTCGAGAATAATGACACAGGATCTAAATGACGGTTTTCAAGTTACGGAGGCTTTGCGAGTGCAAATGGAGGTTCAAAGAAGGCTGCACGAGCAGCTGGAGGTACAACGTCATCTTCAACTTCGCATTGAAGCACAAGGCAAATACTTGCAGTCGATACTCGAGCGGGCTTGCCAAGCATTGAGCGATCAGACTGCAGCGTCCGCTGGACTCGAAGCTGCCAGAGAAGAGCTCTCTGAACTTGCAATCAAAGTCTCGAATGACTCTAAAGAGATGGCACCATTGGAGTCTCATAAAGTGCTTCCCTTCTCAGAACTTGCTGCAGCTCTAGAAAACCGAAAAGCTCCTACTATTATGGCCCGAATAGGCGATTGCTCCATGGATAGTTGCCTGACATCAGCTGGAAGCCCGGTTTCCCCGATCGGAGTAGGATCAACTGTCACTGCAATGAAGAGACCGAGACCAGTTTTTAGTCATGGAGATTCAATGGCTCTCGAGGGCAATGCACGGCACGAAGTCGAATGGATGATGAGTAATATTGGATGA | 951 | 50.47 | MLSGFSQEPAGMYSAIPALPIDGGGHGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSKDASCMAESQETSSSSSPSSRIMTQDLNDGFQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILERACQALSDQTAASAGLEAAREELSELAIKVSNDSKEMAPLESHKVLPFSELAAALENRKAPTIMARIGDCSMDSCLTSAGSPVSPIGVGSTVTAMKRPRPVFSHGDSMALEGNARHEVEWMMSNIG | 316 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 4152978 | 4157339 | - | Tan0010471.1 | Tan10g0520 | 765314 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tan10g0520 | 316 | Pfam | MYB-CC type transfactor, LHEQLE motif | 149 | 194 | IPR025756 | - | |
Tan10g0520 | 316 | FunFam | Myb family transcription factor | 50 | 108 | - | - | |
Tan10g0520 | 316 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 27 | 273 | IPR046955 | GO:0003700(InterPro) | |
Tan10g0520 | 316 | MobiDBLite | consensus disorder prediction | 114 | 140 | - | - | |
Tan10g0520 | 316 | Gene3D | - | 50 | 109 | - | - | |
Tan10g0520 | 316 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 48 | 108 | IPR017930 | - | |
Tan10g0520 | 316 | SUPERFAMILY | Homeodomain-like | 51 | 108 | IPR009057 | - | |
Tan10g0520 | 316 | Coils | Coil | 206 | 226 | - | - | |
Tan10g0520 | 316 | MobiDBLite | consensus disorder prediction | 115 | 140 | - | - | |
Tan10g0520 | 316 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 51 | 106 | IPR006447 | GO:0003677(InterPro) | |
Tan10g0520 | 316 | Pfam | Myb-like DNA-binding domain | 53 | 104 | IPR001005 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Tan03g2190 | Tan-Chr3:76431564 | Tan10g0520 | Tan-Chr10:4152978 | 1.40E-45 | dispersed | |
Tan05g0577 | Tan-Chr5:4195205 | Tan10g0520 | Tan-Chr10:4152978 | 1.50E-40 | dispersed | |
Tan07g2044 | Tan-Chr7:71999665 | Tan10g0520 | Tan-Chr10:4152978 | 1.30E-31 | dispersed | |
Tan09g0473 | Tan-Chr9:44324963 | Tan10g0520 | Tan-Chr10:4152978 | 6.80E-22 | dispersed | |
Tan10g0520 | Tan-Chr10:4152978 | Tan10g1521 | Tan-Chr10:23426252 | 1.50E-36 | dispersed | |
Tan10g0520 | Tan-Chr10:4152978 | Tan02g0014 | Tan-Chr2:571209 | 3.30E-39 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
28504 | PF00249 | Myb_DNA-binding | 1.90E-07 | CL0123 | Tan | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tan10g0520 | - | - | - | 0.0 |