Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0520 ATGCTCTCTGGGTTTTCTCAGGAACCGGCCGGAATGTATTCAGCCATTCCGGCGCTGCCGATCGACGGCGGCGGCCACGGCAAGTTTCAGGGTTCTCTTGACGGAACGAATCTTCCCGGTGACGCTTGTTTGGTTCTCACGTCGGATCCGAAGCCGCGCCTCCGTTGGACGGCGGAACTTCATGAGCGATTTGTCGACGCCGTCACTCAGCTCGGCGGCCCTGACAAGGCAACCCCAAAAACAATTATGAGAACAATGGGAGTAAAAGGTCTCACCCTTTATCACTTAAAATCACACCTCCAGAAATATCGGCTCGGGAAGCAGTCGTTCAAGGAATCGACTGAGAACTCAAAGGATGCTTCATGTATGGCAGAAAGTCAAGAAACAAGTTCCTCTTCGTCACCATCGTCGAGAATAATGACACAGGATCTAAATGACGGTTTTCAAGTTACGGAGGCTTTGCGAGTGCAAATGGAGGTTCAAAGAAGGCTGCACGAGCAGCTGGAGGTACAACGTCATCTTCAACTTCGCATTGAAGCACAAGGCAAATACTTGCAGTCGATACTCGAGCGGGCTTGCCAAGCATTGAGCGATCAGACTGCAGCGTCCGCTGGACTCGAAGCTGCCAGAGAAGAGCTCTCTGAACTTGCAATCAAAGTCTCGAATGACTCTAAAGAGATGGCACCATTGGAGTCTCATAAAGTGCTTCCCTTCTCAGAACTTGCTGCAGCTCTAGAAAACCGAAAAGCTCCTACTATTATGGCCCGAATAGGCGATTGCTCCATGGATAGTTGCCTGACATCAGCTGGAAGCCCGGTTTCCCCGATCGGAGTAGGATCAACTGTCACTGCAATGAAGAGACCGAGACCAGTTTTTAGTCATGGAGATTCAATGGCTCTCGAGGGCAATGCACGGCACGAAGTCGAATGGATGATGAGTAATATTGGATGA 951 50.47 MLSGFSQEPAGMYSAIPALPIDGGGHGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSKDASCMAESQETSSSSSPSSRIMTQDLNDGFQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILERACQALSDQTAASAGLEAAREELSELAIKVSNDSKEMAPLESHKVLPFSELAAALENRKAPTIMARIGDCSMDSCLTSAGSPVSPIGVGSTVTAMKRPRPVFSHGDSMALEGNARHEVEWMMSNIG 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4152978 4157339 - Tan0010471.1 Tan10g0520 765314

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0520 316 Pfam MYB-CC type transfactor, LHEQLE motif 149 194 IPR025756 -
Tan10g0520 316 FunFam Myb family transcription factor 50 108 - -
Tan10g0520 316 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 27 273 IPR046955 GO:0003700(InterPro)
Tan10g0520 316 MobiDBLite consensus disorder prediction 114 140 - -
Tan10g0520 316 Gene3D - 50 109 - -
Tan10g0520 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 48 108 IPR017930 -
Tan10g0520 316 SUPERFAMILY Homeodomain-like 51 108 IPR009057 -
Tan10g0520 316 Coils Coil 206 226 - -
Tan10g0520 316 MobiDBLite consensus disorder prediction 115 140 - -
Tan10g0520 316 NCBIfam myb-like DNA-binding domain, SHAQKYF class 51 106 IPR006447 GO:0003677(InterPro)
Tan10g0520 316 Pfam Myb-like DNA-binding domain 53 104 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0520 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2190 Tan-Chr3:76431564 Tan10g0520 Tan-Chr10:4152978 1.40E-45 dispersed
Tan05g0577 Tan-Chr5:4195205 Tan10g0520 Tan-Chr10:4152978 1.50E-40 dispersed
Tan07g2044 Tan-Chr7:71999665 Tan10g0520 Tan-Chr10:4152978 1.30E-31 dispersed
Tan09g0473 Tan-Chr9:44324963 Tan10g0520 Tan-Chr10:4152978 6.80E-22 dispersed
Tan10g0520 Tan-Chr10:4152978 Tan10g1521 Tan-Chr10:23426252 1.50E-36 dispersed
Tan10g0520 Tan-Chr10:4152978 Tan02g0014 Tan-Chr2:571209 3.30E-39 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tan10g0520 . 12 316 G2-like Transcription Factor Family AT3G24120 57.0 7.6e-78 288.1
Tan02g0015 . 21 197 G2-like Transcription Factor Family AT3G24120 57.2 3.9e-42 169.5
Tan02g0014 . 21 187 G2-like Transcription Factor Family AT3G24120 56.4 8.2e-40 161.8
Tan05g0577 . 22 167 G2-like Transcription Factor Family AT3G24120 61.1 1.4e-39 161.0
Tan03g2190 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 1.7e-37 154.1
Tan07g2007 . 188 389 G2-like Transcription Factor Family AT5G16560 50.7 2.6e-41 167.2
Tan02g1912 . 4 156 G2-like Transcription Factor Family AT5G42630 60.0 1.5e-41 167.2
Tan01g4854 . 10 199 G2-like Transcription Factor Family AT5G42630 51.6 6.8e-39 158.3
Tan08g0199 . 1 373 G2-like Transcription Factor Family AT2G03500 52.2 1.3e-83 307.8
Tan09g1338 . 3 353 G2-like Transcription Factor Family AT2G03500 54.6 3.8e-70 263.1
Tan11g1867 . 20 260 G2-like Transcription Factor Family AT1G25550 56.6 9.9e-56 214.5
Tan04g0896 . 19 255 G2-like Transcription Factor Family AT1G25550 56.5 7.1e-54 208.4
Tan04g0896 . 19 274 G2-like Transcription Factor Family AT1G68670 53.3 5.0e-60 229.2
Tan11g1867 . 20 260 G2-like Transcription Factor Family AT3G25790 50.2 1.9e-40 163.7
Tan01g2410 . 1 296 G2-like Transcription Factor Family AT3G46640 50.2 4.4e-63 239.2
Tan01g2411 . 1 296 G2-like Transcription Factor Family AT3G46640 50.2 4.4e-63 239.2
Tan01g2412 . 1 296 G2-like Transcription Factor Family AT3G46640 50.2 4.4e-63 239.2
Tan03g0518 . 1 302 G2-like Transcription Factor Family AT5G05090 54.6 5.9e-74 275.0
Tan08g1295 . 1 288 G2-like Transcription Factor Family AT5G05090 52.3 1.8e-67 253.4
Tan10g0520 . 12 316 G2-like Transcription Factor Family AT4G13640 56.0 7.5e-62 235.0
Tan10g0520 . 12 316 G2-like Transcription Factor Family AT3G24120 57.0 7.6e-78 288.1
Tan02g0015 . 21 197 G2-like Transcription Factor Family AT3G24120 57.2 3.9e-42 169.5
Tan02g0014 . 21 187 G2-like Transcription Factor Family AT3G24120 56.4 8.2e-40 161.8
Tan05g0577 . 22 167 G2-like Transcription Factor Family AT3G24120 61.1 1.4e-39 161.0
Tan03g2190 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 1.7e-37 154.1
Tan02g1465 . 1 229 G2-like Transcription Factor Family AT1G69580 55.0 8.3e-49 191.8
Tan02g0014 . 1 359 G2-like Transcription Factor Family AT1G79430 57.4 2.3e-89 326.6
Tan02g0015 . 1 369 G2-like Transcription Factor Family AT1G79430 55.7 1.4e-86 317.4
Tan05g0577 . 1 364 G2-like Transcription Factor Family AT1G79430 53.0 6.3e-79 292.0
Tan02g0016 . 1 291 G2-like Transcription Factor Family AT1G79430 51.4 1.2e-56 218.0
Tan10g0520 . 26 204 G2-like Transcription Factor Family AT1G79430 56.8 5.8e-40 162.5
Tan10g1521 . 72 288 G2-like Transcription Factor Family AT3G04030 56.4 1.4e-42 171.0
Tan10g1520 . 72 294 G2-like Transcription Factor Family AT3G04030 54.9 9.3e-42 168.3
Tan03g2189 . 101 343 G2-like Transcription Factor Family AT2G01060 62.3 1.7e-56 216.9
Tan03g0518 . 1 302 G2-like Transcription Factor Family AT3G10760 62.5 3.9e-91 332.4
Tan08g1295 . 1 288 G2-like Transcription Factor Family AT3G10760 59.8 7.2e-85 311.6
Tan03g0518 . 1 204 G2-like Transcription Factor Family AT2G40970 60.8 1.2e-60 230.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003817 2 2 2 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28504 PF00249 Myb_DNA-binding 1.90E-07 CL0123 Tan TF