Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0520 ATGCTCTCTGGGTTTTCTCAGGAACCGGCCGGAATGTATTCAGCCATTCCGGCGCTGCCGATCGACGGCGGCGGCCACGGCAAGTTTCAGGGTTCTCTTGACGGAACGAATCTTCCCGGTGACGCTTGTTTGGTTCTCACGTCGGATCCGAAGCCGCGCCTCCGTTGGACGGCGGAACTTCATGAGCGATTTGTCGACGCCGTCACTCAGCTCGGCGGCCCTGACAAGGCAACCCCAAAAACAATTATGAGAACAATGGGAGTAAAAGGTCTCACCCTTTATCACTTAAAATCACACCTCCAGAAATATCGGCTCGGGAAGCAGTCGTTCAAGGAATCGACTGAGAACTCAAAGGATGCTTCATGTATGGCAGAAAGTCAAGAAACAAGTTCCTCTTCGTCACCATCGTCGAGAATAATGACACAGGATCTAAATGACGGTTTTCAAGTTACGGAGGCTTTGCGAGTGCAAATGGAGGTTCAAAGAAGGCTGCACGAGCAGCTGGAGGTACAACGTCATCTTCAACTTCGCATTGAAGCACAAGGCAAATACTTGCAGTCGATACTCGAGCGGGCTTGCCAAGCATTGAGCGATCAGACTGCAGCGTCCGCTGGACTCGAAGCTGCCAGAGAAGAGCTCTCTGAACTTGCAATCAAAGTCTCGAATGACTCTAAAGAGATGGCACCATTGGAGTCTCATAAAGTGCTTCCCTTCTCAGAACTTGCTGCAGCTCTAGAAAACCGAAAAGCTCCTACTATTATGGCCCGAATAGGCGATTGCTCCATGGATAGTTGCCTGACATCAGCTGGAAGCCCGGTTTCCCCGATCGGAGTAGGATCAACTGTCACTGCAATGAAGAGACCGAGACCAGTTTTTAGTCATGGAGATTCAATGGCTCTCGAGGGCAATGCACGGCACGAAGTCGAATGGATGATGAGTAATATTGGATGA 951 50.47 MLSGFSQEPAGMYSAIPALPIDGGGHGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSKDASCMAESQETSSSSSPSSRIMTQDLNDGFQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILERACQALSDQTAASAGLEAAREELSELAIKVSNDSKEMAPLESHKVLPFSELAAALENRKAPTIMARIGDCSMDSCLTSAGSPVSPIGVGSTVTAMKRPRPVFSHGDSMALEGNARHEVEWMMSNIG 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4152978 4157339 - Tan0010471.1 Tan10g0520 765314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0520 316 Pfam MYB-CC type transfactor, LHEQLE motif 149 194 IPR025756 -
Tan10g0520 316 FunFam Myb family transcription factor 50 108 - -
Tan10g0520 316 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 27 273 IPR046955 GO:0003700(InterPro)
Tan10g0520 316 MobiDBLite consensus disorder prediction 114 140 - -
Tan10g0520 316 Gene3D - 50 109 - -
Tan10g0520 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 48 108 IPR017930 -
Tan10g0520 316 SUPERFAMILY Homeodomain-like 51 108 IPR009057 -
Tan10g0520 316 Coils Coil 206 226 - -
Tan10g0520 316 MobiDBLite consensus disorder prediction 115 140 - -
Tan10g0520 316 NCBIfam myb-like DNA-binding domain, SHAQKYF class 51 106 IPR006447 GO:0003677(InterPro)
Tan10g0520 316 Pfam Myb-like DNA-binding domain 53 104 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan03g2190 Tan-Chr3:76431564 Tan10g0520 Tan-Chr10:4152978 1.40E-45 dispersed
Tan05g0577 Tan-Chr5:4195205 Tan10g0520 Tan-Chr10:4152978 1.50E-40 dispersed
Tan07g2044 Tan-Chr7:71999665 Tan10g0520 Tan-Chr10:4152978 1.30E-31 dispersed
Tan09g0473 Tan-Chr9:44324963 Tan10g0520 Tan-Chr10:4152978 6.80E-22 dispersed
Tan10g0520 Tan-Chr10:4152978 Tan10g1521 Tan-Chr10:23426252 1.50E-36 dispersed
Tan10g0520 Tan-Chr10:4152978 Tan02g0014 Tan-Chr2:571209 3.30E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28504 PF00249 Myb_DNA-binding 1.90E-07 CL0123 Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0520 - - - 0.0