Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0526 ATGGAGAAAGACGATAACTACTCGAACGAAGCTCCAATGCCTCCAAATTTCCCCACCCACCACCAAGATCTCTACAACAACCAAGACCAATTCATGAGGTCTCGCCCCCTCGAAACCTCCGGCGACAACTCCGCCGGAATCCTCACCTACTTTCCGGCCAACCCTCCTCCGCTGCAGCCGATTACTTCATTCGACAAACTCAGCTTCGCGGAGGTTATGCAGTTCGCCGACTTTGGTCCGAAGCTCAGCCTCAACCGGTTCGACGAGCAGGACGAACCGGCCGGGATCGACCCGGTCTACTTCCTGAAGTTCCCGGTTCTGAATAATGAGAGGGTGGACGAGGCGGCGGCCGGAGAGGAGGAGGCGGCGGAGGAGATGGGAGGGAGAATTGTTGGGGAATTAGAAGAGGAGGAGAATTTTAAAAATAATAATAATAATAATAATTGCAGTAATAATAATGGTAATAATAAAAGAAAAAGAGGAAGGACGGTAAAAACAAGTGAAGAAGTGGAGAGTCAAAGAATGACGCATATTGCGGTGGAAAGGAATCGAAGGAAGCAGATGAATGAGCATCTTCGCGTTTTGCGCTCTCTCATGCCTGGTTCTTACGTTCAAAGGGGAGATCAAGCTTCAATAATCGGCGGAGCAATCGAGTTCGTGAGGGAGCTCGAGCAGCTCCTCCAATGTCTAGAATCCCAAAAACGGCGTCGTCTCCTCGGAGAACCGCCACTGCAGACTGCCGACACGCCATCGCAGCAGCAACCGCCATTTCTACCACCGCCGCCGGGAGCCGCTAATTTTGCTGCTCATCAAAACGACGGCCAAATCTTCGAAACGACGGCGGAGAGCAAATCGTGCCTTGCTGACGTGGAAGTGAAGGTTCTAGGGTTCGACGCTATGATAAAAATCCTTTCGAGAAGACGGCCGGGACAGCTCATCAAAGCCATTGCCGCCCTTGAAGATTTGCAACTCAATATTCTTCATACTAATATTACCACCATTGAACAAACTGTTCTTTATTCCTTCAACGTCAAGATAGCAAACGAGTCAAGATTCACAGCAGAAGACATAGCGAGCTCAGTTCAACAGATATTCAGTTTTATTCATGCAAACACCGGAGCCGACAATATTAAAAATATTATCCGAAAGATGTTAAATGTGTGGAAGAACTTTTCGTTAAAAAAAAAAAAAGAGGGGAATAAATAA 1206 47.84 MEKDDNYSNEAPMPPNFPTHHQDLYNNQDQFMRSRPLETSGDNSAGILTYFPANPPPLQPITSFDKLSFAEVMQFADFGPKLSLNRFDEQDEPAGIDPVYFLKFPVLNNERVDEAAAGEEEAAEEMGGRIVGELEEEENFKNNNNNNNCSNNNGNNKRKRGRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEPPLQTADTPSQQQPPFLPPPPGAANFAAHQNDGQIFETTAESKSCLADVEVKVLGFDAMIKILSRRRPGQLIKAIAALEDLQLNILHTNITTIEQTVLYSFNVKIANESRFTAEDIASSVQQIFSFIHANTGADNIKNIIRKMLNVWKNFSLKKKKEGNK 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4203530 4209958 - Tan0021683.2 Tan10g0526 765320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0526 401 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 172 245 IPR036638 GO:0046983(InterPro)
Tan10g0526 401 FunFam Basic helix-loop-helix transcription factor 163 238 - -
Tan10g0526 401 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 223 IPR011598 GO:0046983(InterPro)
Tan10g0526 401 MobiDBLite consensus disorder prediction 242 262 - -
Tan10g0526 401 CDD ACT_UUR-ACR-like 300 364 - -
Tan10g0526 401 ProSiteProfiles ACT domain profile. 300 382 IPR002912 -
Tan10g0526 401 MobiDBLite consensus disorder prediction 161 175 - -
Tan10g0526 401 Pfam Helix-loop-helix DNA-binding domain 173 224 IPR011598 GO:0046983(InterPro)
Tan10g0526 401 MobiDBLite consensus disorder prediction 141 157 - -
Tan10g0526 401 MobiDBLite consensus disorder prediction 140 175 - -
Tan10g0526 401 CDD bHLH_AtFAMA_like 175 243 - -
Tan10g0526 401 PANTHER TRANSCRIPTION FACTOR FAMA 89 367 IPR044283 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER)
Tan10g0526 401 Gene3D - 164 238 IPR036638 GO:0046983(InterPro)
Tan10g0526 401 SMART finulus 178 229 IPR011598 GO:0046983(InterPro)
Tan10g0526 401 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan09g0274 Tan-Chr9:23636714 Tan10g0526 Tan-Chr10:4203530 6.90E-30 dispersed
Tan10g0006 Tan-Chr10:272000 Tan10g0526 Tan-Chr10:4203530 7.70E-36 dispersed
Tan10g0526 Tan-Chr10:4203530 Tan10g0885 Tan-Chr10:7421692 8.70E-37 dispersed
Tan10g0525 Tan-Chr10:4203530 Tan10g0526 Tan-Chr10:4203530 9.80E-190 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28506 PF00010 HLH 8.50E-10 No_clan Tan TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0526 K26213 - csv:101214530 531.561