Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0556 ATGCAGTACAAGAACTTGGGCAGGTCCGGCTTAAAGGTCAGCCAGTTATCCTACGGAGCTTGGGTCAGCTTCGGCAATCAGCTCGATGTACGAGAAGCCAAATCTCTTCTCCAATGCTGCCGTGACCATGGCGTCAATTTCTTCGACAACGCCGAGGTCTACGCCAATGGCAGAGCCGAGGAGATCATGGGTCAGGCCATTCGGGAGCTCGGATGGAAGCGCTCCGATATTGTTGTCTCCACCAAGATCTTTTGGGGCGGTCCTGGTCCGAACGATAAGGGGCTTTCGAGGAAGCACATCGTTGAAGGTACCAAAGCTTCGTTGAAGCGATTGGATATGGAGTATGTCGATCTTATTTACTGTCACCGGCCGGATTCGTCGACGCCGATCGAAGAGACGGTGAGGGCGATGAATTATGTGATTGATAAGGGATGGGCGTTTTATTGGGGAACCAGTGAGTGGTCGGCTCAGCAGATCACCGAGGCTTGGGGTATCGCTGAGAAATTGGATTTGGTTGGACCGATTGTGGAGCAGCCGGAGTATAATTTGTTATCTCGGCATAAGGTTGAGTCAGAGTTTCTCCCTCTGTACACCAACTATGGCTTAGGTCTAACGACATGGAGTCCACTGGCATCGGGCGTGCTCACTGGAAAATACAACAAGGGAACTATACCAGCTGATAGCCGATTTGCTTTGGAAAATTACAAAAATCTTGCAAATCGTTCTCTGGTTGATGATGTGTTGAGAAAAGTCAATGGGTTGAAACCAATTGCAGATGAGCTAGGTGTGCCATTGTCGCAGCTAGCAATTGCATGGTGTGCTGCAAATCCTAATGTCTCATCGGTTATTACTGGTGCAACGAAAGAATCTCAGATTCAGGAGAACATGAAAGCTGTGGATGTGATCCCATTGCTAACTCCTGCAATAATGGAGAGCATTGAGGCTGTTGTTCAAAGCAAGCCAAAGCGCCCAGAGTCATTTAGGTGA 987 48.94 MQYKNLGRSGLKVSQLSYGAWVSFGNQLDVREAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGPGPNDKGLSRKHIVEGTKASLKRLDMEYVDLIYCHRPDSSTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIAEKLDLVGPIVEQPEYNLLSRHKVESEFLPLYTNYGLGLTTWSPLASGVLTGKYNKGTIPADSRFALENYKNLANRSLVDDVLRKVNGLKPIADELGVPLSQLAIAWCAANPNVSSVITGATKESQIQENMKAVDVIPLLTPAIMESIEAVVQSKPKRPESFR 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4468141 4472397 - Tan0019332.1 Tan10g0556 765350

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0556 328 PANTHER HYPERKINETIC, ISOFORM M 1 327 IPR005399 -
Tan10g0556 328 SUPERFAMILY NAD(P)-linked oxidoreductase 1 319 IPR036812 -
Tan10g0556 328 PRINTS KCNAB voltage-gated K+ channel beta subunit family signature 258 270 IPR005399 -
Tan10g0556 328 PRINTS KCNAB voltage-gated K+ channel beta subunit family signature 110 120 IPR005399 -
Tan10g0556 328 PRINTS KCNAB voltage-gated K+ channel beta subunit family signature 161 180 IPR005399 -
Tan10g0556 328 PRINTS KCNAB voltage-gated K+ channel beta subunit family signature 206 212 IPR005399 -
Tan10g0556 328 PRINTS KCNAB voltage-gated K+ channel beta subunit family signature 271 284 IPR005399 -
Tan10g0556 328 Pfam Aldo/keto reductase family 16 316 IPR023210 -
Tan10g0556 328 Gene3D - 1 323 IPR036812 -
Tan10g0556 328 FunFam Probable voltage-gated potassium channel subunit beta 1 323 - -
Tan10g0556 328 CDD AKR_AKR6C1_2 1 316 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0556 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g0556 Tan-Chr10:4468141 Tan10g0577 Tan-Chr10:4686709 2.50E-191 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g849 . . . . . Bpe14g01296 . . . . . . . Car14g01676 Sed02g1471 . Cpe03g01572 Bhi01g00060 Tan10g0556 Cmetu06g1480 . . . Lcy11g1747 . . . . . . . . . . Cone4ag0385 Lsi05g01815 . . Cme06g00408 . . . Bda13g00025 . . Bma02g01213 . . . Cmo14g01921 . . . . . . . . . . . . . Cla05g00370 Cam05g0403 Cec05g0408 Cco05g0408 Clacu05g0398 Cmu05g0383 Cre05g0445 . Csa03g01126 Chy06g00392 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010593 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 2 1 1 1 2 1 1 1 1 1 1 2 1 32