Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0579 ATGGCAATGGCGGAATCTGGAGGATGGATTCGGTTGTTTCTTCTCGTGGTGTTCATGTTGTTCGTCGGAACAATCGCCAGAGTTCCTAAAGAGATTTCCGAAATTGAGAATGGAGCAAATGAGATGTTGCAGAGCTCAAGCAACTCATCAATGGCAGCGAGGTTGGACGAGGTTGAGCCTCTCGGCAATAAGCATGCTGTTGACAACCCTGAAGAGATCGCTGCTATGGTTGACATGAGTATCCGCAATGCCACTGCGAGGAGGGAGCTTGGTTTCTTTTCATGCGGAACCGGCAATCCAATTGATGACTGCTGGCGTTGCGACTCCAATTGGCAACAGAACCGCAAACGTCTGGCAGATTGTGGCATTGGCTTCGGCCGAAATGCCATCGGTGGTCGTGACGGTCGATTCTACGTCGTCACTGATTCCGGCGACGACGACCCTATCAACCCAAGGCCTGGCACTTTGCGACATGCCGTTATCCAGGATGAACCTCTCTGGATTGTGTTCAAAAGAGATATGGTGATACAGCTGAAACAGGAACTGATCATGAACAGTTTCAAGACAATTGATGCTCGTGGGACCAACGTCCACATTGCCAATGGTGCTTGCCTCACAATCCAGTTTGTGACCAATGTTATTGTCCATGGTCTAAACATCCATGACTGCAAACCCACTGGAAACGCCATGGTAAGGAGCTCACCCAATCACGTTGGGTGGAGAACAATGGCTGATGGAGATGCCATTTCCATTTTTGGTTCAAGTCATATTTGGATCGATCACAATTCACTCTCTAATTGTGCTGATGGCCTTGTTGATGCTGTCATGGGATCCACTGCAATTACAATCACCAACAATTACTTCACCCACCACAATGAGGTAATGTTACTGGGGCATAGTGATTCTTACGTTAGAGATAAACAAATGCAAGTGACCATTGCTTACAATCACTTTGGAGAAGGACTCATCCAAAGAATGCCAAGGTGTAGACACGGATACTTCCATGTGGTGAACAATGATTATACTCACTGGGAGATGTATGCCATTGGTGGAAGTGCAAATCCAACCATCAACAGCCAGGGTAATAGATATGCTGCTCCAACCAACCCTTTTGCTAAAGAGGTGACCAAAAGGGTTGAGACAGCTGAAACTGAGTGGAAAAATTGGAATTGGAGATCAGAGGGAGACCTATTGTTGAATGGTGCCTTTTTCACTCCATCTGGTGCAGGGGCCTCAGCAAGCTATGCCAGAGCCTCAAGCTTGGGAGCTAAATCCTCATCCATGGTTGGTTCCATAACATCCAGCGCCGGTGCGCTTAACTGCCGGAGAGGCCATCCCTGCTAG 1344 47.92 MAMAESGGWIRLFLLVVFMLFVGTIARVPKEISEIENGANEMLQSSSNSSMAARLDEVEPLGNKHAVDNPEEIAAMVDMSIRNATARRELGFFSCGTGNPIDDCWRCDSNWQQNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGDDDPINPRPGTLRHAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGTNVHIANGACLTIQFVTNVIVHGLNIHDCKPTGNAMVRSSPNHVGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITITNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAETEWKNWNWRSEGDLLLNGAFFTPSGAGASASYARASSLGAKSSSMVGSITSSAGALNCRRGHPC 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4745473 4750242 + Tan0000825.1 Tan10g0579 765373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0579 447 FunFam Pectate lyase 98 440 - -
Tan10g0579 447 PRINTS Pollen allergen Amb family signature 418 441 IPR018082 -
Tan10g0579 447 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
Tan10g0579 447 PRINTS Pollen allergen Amb family signature 389 413 IPR018082 -
Tan10g0579 447 PRINTS Pollen allergen Amb family signature 347 366 IPR018082 -
Tan10g0579 447 PRINTS Pollen allergen Amb family signature 121 138 IPR018082 -
Tan10g0579 447 PRINTS Pollen allergen Amb family signature 181 197 IPR018082 -
Tan10g0579 447 PRINTS Pollen allergen Amb family signature 145 170 IPR018082 -
Tan10g0579 447 PRINTS Pollen allergen Amb family signature 245 266 IPR018082 -
Tan10g0579 447 SUPERFAMILY Pectin lyase-like 75 442 IPR011050 -
Tan10g0579 447 PANTHER PECTATE LYASE 18-RELATED 19 444 IPR045032 GO:0030570(InterPro)
Tan10g0579 447 Pfam Pectate lyase 184 362 IPR002022 -
Tan10g0579 447 SMART amb_all 173 370 IPR002022 -
Tan10g0579 447 Gene3D - 98 440 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g2326 Tan-Chr6:74603497 Tan10g0579 Tan-Chr10:4745473 1.50E-200 dispersed
Tan10g0579 Tan-Chr10:4745473 Tan11g0685 Tan-Chr11:5943029 8.40E-166 dispersed
Tan10g0579 Tan-Chr10:4745473 Tan10g0580 Tan-Chr10:4745473 9.70E-255 tandem
Tan10g0579 Tan-Chr10:4745473 Tan06g2325 Tan-Chr6:74602422 2.30E-219 wgd
Tan10g0579 Tan-Chr10:4745473 Tan07g2128 Tan-Chr7:72582443 1.90E-202 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0579 K01728 - csv:101218188 853.203