Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0580 ATGGCAATGGCGGAATCTGGAGGATGGATTCGGTTGTTTCTTCTCGTGGTGTTCATGTTGTTCGTCGGAACAATCGCCAGAGTTCCTAAAGAGATTTCCGAAATTGAGAATGGAGCAAATGAGATGTTGCAGAGCTCAAGCAACTCATCAATGGCAGCGAGGTTGGACGAGGTTGAGCCTCTCGGCAATAAGCATGCTGTTGACAACCCTGAAGAGATCGCTGCTATGGTTGACATGAGTATCCGCAATGCCACTGCGAGGAGGGAGCTTGGTTTCTTTTCATGCGGAACCGGCAATCCAATTGATGACTGCTGGCGTTGCGACTCCAATTGGCAACAGAACCGCAAACGTCTGGCAGATTGTGGCATTGGCTTCGGCCGAAATGCCATCGGTGGTCGTGACGGTCGATTCTACGTCGTCACTGATTCCGGCGACGACGACCCTATCAACCCAAGGCCTGGCACTTTGCGACATGCCGTTATCCAGGATGAACCTCTCTGGATTGTGTTCAAAAGAGATATGGTGATACAGCTGAAACAGGAACTGATCATGAACAGTTTCAAGACAATTGATGCTCGTGGGACCAACGTCCACATTGCCAATGGTGCTTGCCTCACAATCCAGTTTGTGACCAATGTTATTGTCCATGGTCTAAACATCCATGACTGCAAACCCACTGGAAACGCCATGGTAAGGAGCTCACCCAATCACGTTGGGTGGAGAACAATGGCTGATGGAGATGCCATTTCCATTTTTGGTTCAAGTCATATTTGGATCGATCACAATTCACTCTCTAATTGTGCTGATGGCCTTGTTGATGCTGTCATGGGATCCACTGCAATTACAATCACCAACAATTACTTCACCCACCACAATGAGGTATCTTCATTTCATCCATCTACTCGGTTCGTATTTTTGCCATTTTTCAGAGACATTGCATCACGTTGTGTGTTTAATGAACAGGTAATGTTACTGGGGCATAGTGATTCTTACGTTAGAGATAAACAAATGCAAGTGACCATTGCTTACAATCACTTTGGAGAAGGACTCATCCAAAGAATGCCAAGGTGTAGACACGGATACTTCCATGTGGTGAACAATGATTATACTCACTGGGAGATGTATGCCATTGGTGGAAGTGCAAATCCAACCATCAACAGCCAGGGTAATAGATATGCTGCTCCAACCAACCCTTTTGCTAAAGAGGTGACCAAAAGGGTTGAGACAGCTGAAACTGAGTGGAAAAATTGGAATTGGAGATCAGAGGGAGACCTATTGTTGAATGGTGCCTTTTTCACTCCATCTGGTGCAGGGGCCTCAGCAAGCTATGCCAGAGCCTCAAGCTTGGGAGCTAAATCCTCATCCATGGTTGGTTCCATAACATCCAGCGCCGGTGCGCTTAACTGCCGGAGAGGCCATCCCTGCTAG 1428 47.27 MAMAESGGWIRLFLLVVFMLFVGTIARVPKEISEIENGANEMLQSSSNSSMAARLDEVEPLGNKHAVDNPEEIAAMVDMSIRNATARRELGFFSCGTGNPIDDCWRCDSNWQQNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGDDDPINPRPGTLRHAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGTNVHIANGACLTIQFVTNVIVHGLNIHDCKPTGNAMVRSSPNHVGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITITNNYFTHHNEVSSFHPSTRFVFLPFFRDIASRCVFNEQVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAETEWKNWNWRSEGDLLLNGAFFTPSGAGASASYARASSLGAKSSSMVGSITSSAGALNCRRGHPC 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4745473 4750242 + Tan0000825.2 Tan10g0580 765374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0580 475 SMART amb_all 173 398 IPR002022 -
Tan10g0580 475 Pfam Pectate lyase 184 294 IPR002022 -
Tan10g0580 475 Pfam Pectate lyase 318 390 IPR002022 -
Tan10g0580 475 PRINTS Pollen allergen Amb family signature 181 197 IPR018082 -
Tan10g0580 475 PRINTS Pollen allergen Amb family signature 245 266 IPR018082 -
Tan10g0580 475 PRINTS Pollen allergen Amb family signature 145 170 IPR018082 -
Tan10g0580 475 PRINTS Pollen allergen Amb family signature 121 138 IPR018082 -
Tan10g0580 475 Gene3D - 98 468 IPR012334 -
Tan10g0580 475 PANTHER PECTATE LYASE 18-RELATED 22 472 IPR045032 GO:0030570(InterPro)
Tan10g0580 475 SUPERFAMILY Pectin lyase-like 75 470 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan06g2325 Tan-Chr6:74602422 Tan10g0580 Tan-Chr10:4745473 5.10E-211 dispersed
Tan07g2128 Tan-Chr7:72582443 Tan10g0580 Tan-Chr10:4745473 6.40E-195 dispersed
Tan10g0580 Tan-Chr10:4745473 Tan11g0685 Tan-Chr11:5943029 1.80E-161 dispersed
Tan10g0579 Tan-Chr10:4745473 Tan10g0580 Tan-Chr10:4745473 9.70E-255 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0580 K01728 - csv:101218188 838.18