Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan10g0596 ATGGAAGAAGTGAAGCTCCATGGGATGTGGGCAAGCCCTTTCAGTTGCAGAGTAAAATGGGTTTGGAAGTCAAGGAAGGTTCCTGTGCTCGTTCATGGCGGAAAACCAGTCTGCGAGTCCATCGTCATTCTCGAATACATTGATGAAACTTGGCCTCAAAATCCTCTGTTTCCCATTGATCCTTTTGAAAGAGCTATGGCTCGGTTTTGGATTAAATATGCTGACAATAAGGAGTTTGGAGGTCAGATTCTGTTCGGCTCCGGCAGCGGCGAGGAAGGGGAAAAAGCTAGGGCAGAAGGCATCGAATTCCTGAGAACAATCGAAGAACAGTGCCTCGGCGACAATAAATTCTTCGCCGGAGAAGCGATCGGCGCCGTGGATTTGGCGTTCGGAGGAATCGCGCACTGGCTCGGAGTTCTTGAAGAATTTGCAGGCACGAAGCTTTTGAACGCCGATGAGTTTCCTCGCTTGTACGCTTGGACTCAAAACTTCAAGGAAGTTGCTGCGATCAGAAATAACCTACCGGACGCCGACGAGTTGGCGGAACTTTACAATCGCCTGCGAGAGCAGCGGCTGCGATCTGCTGCAGAGTAA 594 50.34 MEEVKLHGMWASPFSCRVKWVWKSRKVPVLVHGGKPVCESIVILEYIDETWPQNPLFPIDPFERAMARFWIKYADNKEFGGQILFGSGSGEEGEKARAEGIEFLRTIEEQCLGDNKFFAGEAIGAVDLAFGGIAHWLGVLEEFAGTKLLNADEFPRLYAWTQNFKEVAAIRNNLPDADELAELYNRLREQRLRSAAE 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4852895 4855602 + Tan0019264.1 Tan10g0596 765390

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Tan10g0596 197 Gene3D - 60 195 - -
Tan10g0596 197 Pfam Glutathione S-transferase, N-terminal domain 25 49 IPR004045 -
Tan10g0596 197 SUPERFAMILY GST C-terminal domain-like 49 189 IPR036282 -
Tan10g0596 197 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 55 IPR004045 -
Tan10g0596 197 CDD GST_C_Tau 61 187 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Tan10g0596 197 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 60 187 IPR010987 -
Tan10g0596 197 Pfam Glutathione S-transferase, C-terminal domain 95 164 IPR004046 -
Tan10g0596 197 FunFam Tau class glutathione S-transferase 57 194 - -
Tan10g0596 197 SFLD Main.3: Omega- and Tau-like 25 193 IPR045073 -
Tan10g0596 197 SFLD Main (cytGST) 25 193 - -
Tan10g0596 197 SUPERFAMILY Thioredoxin-like 1 56 IPR036249 -
Tan10g0596 197 Gene3D Glutaredoxin 22 59 - -
Tan10g0596 197 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 25 184 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan10g0596 K00799 - - csv:101220801 311.997
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan10g0596 Tan-Chr10:4852895 Tan10g0600 Tan-Chr10:4880767 2.50E-53 dispersed
Tan10g0596 Tan-Chr10:4852895 Tan10g0599 Tan-Chr10:4865211 1.30E-57 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g815 . . . . . . . . . . Cma06g01278 . . . Sed02g1457 . . Bhi01g00088 Tan10g0596 Cmetu06g2009 . Hepe05g1844 . Lcy11g1727 . . . . . . . . . . . Lsi05g01791 . . Cme06g00432 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g01147 Chy06g00411 .
Vvi15g85 . . . . . . . . . . Cma06g01277 . . . Sed02g1457 . . Bhi01g00088 Tan10g0596 Cmetu06g2009 . Hepe05g1844 . Lcy11g1727 Cla05g00265 Cam05g0289 Cec05g0289 Cco05g0297 Clacu05g0286 Cmu05g0272 Cre05g0336 . . . . Lsi05g01929 . . Cme06g00291 . . . . . . . . . Cmo06g01186 . . . . . . . . . . . . . . . . . . . . . . Csa03g00999 Chy06g00270 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000433 1 5 2 3 1 5 3 5 5 4 2 4 4 7 7 4 4 1 5 4 3 3 3 5 6 6 2 5 5 6 120